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[CCPPETMR/SIRF-SuperBuild] Add cil (#154)
Edoardo Pasca <[log in to unmask]>: Mar 22 06:40AM -0700

@paskino pushed 1 commit.
 
3ca25312c530dea70e0221eb863aa5127d2d2648 fixed text
 
 
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Edoardo Pasca <[log in to unmask]>: Mar 22 06:42AM -0700

paskino commented on this pull request.
 
 
 
> @@ -0,0 +1,49 @@
+# code adapted from
+# https://github.com/symengine/symengine.py/blob/master/cmake/FindCython.cmake
...more
Edoardo Pasca <[log in to unmask]>: Mar 22 06:46AM -0700

@paskino pushed 1 commit.
 
43cc82b14f7ba75ef9ad6b7acd57a24621a27d90 adds version of CIL repos
 
 
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Edoardo Pasca <[log in to unmask]>: Mar 22 06:48AM -0700

@paskino pushed 1 commit.
 
de1c6bd3a4aa8ea2f653df92efc261ab68db2b33 use variable CIL_VERSION
 
 
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Edoardo Pasca <[log in to unmask]>: Mar 22 01:50PM

@paskino pushed 1 commit.
 
ada6d502a60d81d859ec0cded27dc12bddbd3ad1 use specific version of CIL for default build and master in DEVEL_BUILD
 
 
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Edoardo Pasca <[log in to unmask]>: Mar 22 09:50AM -0700

@paskino pushed 2 commits.
 
e581da25cab8ffef988214bd1a8d2187851e95f9 removed hard coded version
685f0d83a7b3fcee2accd4d0df37f9ac9e9ea48f removed comments
 
 
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Edoardo Pasca <[log in to unmask]>: Mar 22 09:53AM -0700

paskino commented on this pull request.
 
 
 
> +set(${proj}_BINARY_DIR "${SUPERBUILD_WORK_DIR}/builds/${proj}/build" )
+set(${proj}_DOWNLOAD_DIR "${SUPERBUILD_WORK_DIR}/downloads/${proj}" ) ...more
Edoardo Pasca <[log in to unmask]>: Mar 22 09:59AM -0700

@paskino pushed 1 commit.
 
cd996d4944a800c85ebaea7523531fcfc2640a0f removed hard coded CIL_VERSION
 
 
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Kris Thielemans <[log in to unmask]>: Mar 22 01:24PM -0700

KrisThielemans requested changes on this pull request.
 
nearly done I think. thanks!
 
> + # if SETUP_PY one can launch the conda build.sh script setting
+ # the appropriate variables. ...more
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[CCPPETMR/SIRF] create DISABLE_* options (#353)
Kris Thielemans <[log in to unmask]>: Mar 22 05:58PM

- added DISABLE_STIR etc
- replace REG_ENABLE with DISABLE_Registration
- replace BUILD_PYTHON with DISABLE_PYTHON
- replace BUILD_MATLAB with DISABLE_Matlab
You can view, comment on, or merge ...more
Kris Thielemans <[log in to unmask]>: Mar 22 11:03AM -0700

Currently following 2 different strategies:
- for Python and Matlab, set default for `DISABLE_*` to `ON` if not found
- for others, set default for `DISABLE_*` to `OFF` (even if it's not found)
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[CCPPETMR/SIRF] disable Reg if NiftyReg not found (#352)
Kris Thielemans <[log in to unmask]>: Mar 22 10:10AM -0700

currently errors out
 
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[CCPPETMR/SIRF-SuperBuild] OSX cant use brew install boost (#222)
Richard Brown <[log in to unmask]>: Mar 22 11:56AM

@rijobro pushed 2 commits.
 
4d0241dd1d2b10ebe17beaac83711bd38cee2ba4 Revert "Update .travis.yml"
482e9328978bc7c0dc06f46bb2c401d81bf8b24b Revert "use homebrew's boost 1.67 (dont reinstall)"
 
...more
Richard Brown <[log in to unmask]>: Mar 22 05:05AM -0700

@rijobro pushed 1 commit.
 
3dea16f7033cc0f01bd3fe2e4caa8b97c348cc88 dont uninstall brew version of boost
 
 
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Richard Brown <[log in to unmask]>: Mar 22 12:42PM

@rijobro pushed 3 commits.
 
7ce5f358565735633c69cbddc31cb23e1790dadb Revert "dont uninstall brew version of boost"
d6847d7dcc8081c7f1ab679f74af1c0f8c5a39a5 Revert "OSX cant use brew install ...more
Richard Brown <[log in to unmask]>: Mar 22 12:43PM

@rijobro pushed 1 commit.
 
84e8c90abe04b72b8f790498a10a3d7748c8fe11 print a tiny bit of info during boost installation
 
 
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Richard Brown <[log in to unmask]>: Mar 22 01:32PM

@rijobro pushed 1 commit.
 
99c91fa16bddc6ef38d14d67cd7c98d13fb92743 disable output from unzipping boost
 
 
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Richard Brown <[log in to unmask]>: Mar 22 09:03AM -0700

@rijobro pushed 1 commit.
 
24819c6eb941c06d2e5b180c44d7bb573e2b1951 trigger travis rebuild
 
 
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Richard Brown <[log in to unmask]>: Mar 22 09:46AM -0700

@rijobro pushed 1 commit.
 
ed87091c54a75f3538f85580772307931e13d8fb use miniconda to get boost
 
 
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[CCPPETMR/SIRF] UserGuide.md is out-of-date (#246)
evgueni-ovtchinnikov <[log in to unmask]>: Mar 22 08:18AM -0700

Closed #246.
 
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evgueni-ovtchinnikov <[log in to unmask]>: Mar 22 08:18AM -0700

superseded by #341
 
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[CCPPETMR/CCPPETMR_VM] update to Ubuntu 18.04 (#104)
Edoardo Pasca <[log in to unmask]>: Mar 22 06:10AM -0700

@paskino pushed 3 commits.
 
15d685a702610bcbb1c8ef405de27b4fad81d7eb removed conflict message
4498f4ba0ecb32d418f56db8a1fc4fc7827f95ac changed VM name
fe620f5909386685cb720ce3c5b8e10c4e79c95d ...more
Edoardo Pasca <[log in to unmask]>: Mar 22 06:32AM -0700

@paskino pushed 1 commit.
 
906c3faf5e5f525af5fcc4405daa7604a57a4d01 removed -V command
 
 
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Edoardo Pasca <[log in to unmask]>: Mar 22 02:15PM

@paskino pushed 1 commit.
 
ce6ea7fa1be50cca746ea704bbc2f1e7e99a6e93 checks if user and homedir is already created
 
 
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[CCPPETMR/SIRF] segfault when creating pSTIR.AcquisitionData from scanner (#349)
Kris Thielemans <[log in to unmask]>: Mar 21 11:18PM -0700

Reopened #349.
 
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Kris Thielemans <[log in to unmask]>: Mar 21 11:56PM -0700

This must have been because I didn't first call
```python
sirf.STIR.AcquisitionData.set_storage_scheme(storage)
```
Clearly, we need to have a default storage scheme. My feeling is that this ...more
evgueni-ovtchinnikov <[log in to unmask]>: Mar 22 02:13AM -0700

default storage scheme is 'file'
sorry for the bug, will fix it properly today
 
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evgueni-ovtchinnikov <[log in to unmask]>: Mar 22 07:10AM -0700

Closed #349 via af279632163ce8b0028939ae5b79ad02e0880bc9.
 
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[CCPPETMR/SIRF] add STIR spect matrix (#329)
Kris Thielemans <[log in to unmask]>: Mar 22 01:45AM -0700

@KrisThielemans pushed 3 commits.
 
2af8e5b8aa14bea23725782ad790b3f40b3947d9 refinements to SPECT demos
a54dbdc0e6c148ad4091d94dabbcce5ef677451d fix z-spacing due to SPECT UB limitations ...more
Kris Thielemans <[log in to unmask]>: Mar 22 12:55PM

@KrisThielemans pushed 3 commits.
 
50240718ba909a7e57e667e46acb95ccb2cd5447 Merge remote-tracking branch 'origin/master' into STIR_SPECT_Matrix
56512fc985115358f02cf409610e1b2d223be4bf Merge ...more
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[CCPPETMR/SIRF] pSTIR.ImageData.initialise doesn't handle numpy ints (#351)
Kris Thielemans <[log in to unmask]>: Mar 22 10:22AM

dimensions should be ints, but `dimensions()` returns `numpy.int32`.
 
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Kris Thielemans <[log in to unmask]>: Mar 22 10:26AM

```
acq_template = sirf.STIR.AcquisitionData('template_sinogram.hs');
acq_dimensions = acq_template.dimensions()
image_size = (acq_dimensions[0],acq_dimensions[2], acq_dimensions[2]);
``` ...more
evgueni-ovtchinnikov <[log in to unmask]>: Mar 22 05:40AM -0700

Closed #351 via 1eff7af9edc8926e0cf78cb0b2a0c49d2f305684.
 
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[CCPPETMR/SIRF-Exercises] delete line in MAPEM.ipynb (#17)
Richard Brown <[log in to unmask]>: Mar 22 03:49AM -0700

You can view, comment on, or merge this pull request online at:
 
https://github.com/CCPPETMR/SIRF-Exercises/pull/17
 
-- Commit Summary --
 
* fix readme.md
* plot slice 5 ...more
Kris Thielemans <[log in to unmask]>: Mar 22 05:20AM -0700

Merged #17 into master.
 
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[CCPPETMR/SIRF-Exercises] Small fixes (#16)
Richard Brown <[log in to unmask]>: Mar 22 03:08AM -0700

- underscores in `README.md`
- Use slice 5 for plot profiles
You can view, comment on, or merge this pull request online at:
 
https://github.com/CCPPETMR/SIRF-Exercises/pull/16
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Richard Brown <[log in to unmask]>: Mar 22 10:19AM

@rijobro pushed 1 commit.
 
d50e0c6f4510387f91af8a6a6038c69fc3abaead fix typo
 
 
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Kris Thielemans <[log in to unmask]>: Mar 22 05:20AM -0700

Merged #16 into master.
 
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[CCPPETMR/CCPPETMR_VM] Build on Linux without system ACE will fail (#102)
Kris Thielemans <[log in to unmask]>: Mar 22 05:03AM -0700

I prefer the second option. Let's close it once https://github.com/CCPPETMR/SIRF-SuperBuild/issues/156 is closed.
 
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[CCPPETMR/SIRF-SuperBuild] Ubuntu18.04 (#220)
Kris Thielemans <[log in to unmask]>: Mar 22 04:31AM -0700

Closed #220.
 
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