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Dear FSL experts I have been unable to find a good answer for the best way of handling multiple resting-state fMRI runs in a single subject. We have acquired two rs-fMRI runs in one session and would like to combine these for purposes of a seed-based connectivity analysis. From the FSL tutorials, it seems that this is done with a fixed-effects second level analysis with task-based fMRI or ICA in FEAT, but I am unclear how you would do this with a seed-based connectivity analysis. Can this be easily done in FSL? Thanks! Erik ######################################################################## To unsubscribe from the FSL list, click the following link: https://www.jiscmail.ac.uk/cgi-bin/webadmin?SUBED1=FSL&A=1