Please try my instructions - this is the wrong version of R. Having investigated further the instructions should work, but I have updated them to specify the R program that needs to be run. Duncan On 6 Mar 2019, at 09:02, Sean Fitzgibbon <[log in to unmask]<mailto:[log in to unmask]>> wrote: Hi Conrad It looks to me like you do not have gfortan 6.1.0 installed. If so, you can install gfortran from here: https://cran.r-project.org/bin/macosx/tools/ Cheers, Sean On 6 Mar 2019, at 00:05, Conrad Rockel <[log in to unmask]<mailto:[log in to unmask]>> wrote: Hi folks, I would like to start using FIX on a Mac (OSX 10.13.5), and today downloaded FIX 1.068. I had been trying to get 1.067 to run, but the dependencies are killing me! I have been following the README file for FIX setup, and as you said, "party" fails to compile on the first try. However, when I try a second time, I get a bunch of errors due to the dependencies of "party". Specifically, I used these commands: conda install R=3.4 conda install r-rocr=1.0_7 r-kernlab=0.9_25 r-randomForest=4.6_12 r-class=7.3_14 r-e1071=1.6_8 r-devtools I launch R (have tried with and without sudo). At first, require(devtools) would not work, so I used conda: install.packages("devtools") require(devtools) would then work within R. The following is the output I receive: install_version("party", version="1.0-25") --- Please select a CRAN mirror for use in this session --- Error in package_find_repo(package, repos) : couldn't find package 'party' install_version("party", version="1.0-25") Downloading package from url: https://cran.revolutionanalytics.com/src/contrib/Archive/party/party_1.0-25.tar.gz * installing *source* package ‘party’ ... ** package ‘party’ successfully unpacked and MD5 sums checked ** libs clang -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I"/Library/Frameworks/R.framework/Versions/3.5/Resources/library/mvtnorm/include" -I/usr/local/include -fPIC -Wall -g -O2 -c Classes.c -o Classes.o clang -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I"/Library/Frameworks/R.framework/Versions/3.5/Resources/library/mvtnorm/include" -I/usr/local/include -fPIC -Wall -g -O2 -c Convenience.c -o Convenience.o clang -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I"/Library/Frameworks/R.framework/Versions/3.5/Resources/library/mvtnorm/include" -I/usr/local/include -fPIC -Wall -g -O2 -c Distributions.c -o Distributions.o clang -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I"/Library/Frameworks/R.framework/Versions/3.5/Resources/library/mvtnorm/include" -I/usr/local/include -fPIC -Wall -g -O2 -c IndependenceTest.c -o IndependenceTest.o clang -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I"/Library/Frameworks/R.framework/Versions/3.5/Resources/library/mvtnorm/include" -I/usr/local/include -fPIC -Wall -g -O2 -c LinearStatistic.c -o LinearStatistic.o clang -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I"/Library/Frameworks/R.framework/Versions/3.5/Resources/library/mvtnorm/include" -I/usr/local/include -fPIC -Wall -g -O2 -c Node.c -o Node.o clang -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I"/Library/Frameworks/R.framework/Versions/3.5/Resources/library/mvtnorm/include" -I/usr/local/include -fPIC -Wall -g -O2 -c Predict.c -o Predict.o clang -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I"/Library/Frameworks/R.framework/Versions/3.5/Resources/library/mvtnorm/include" -I/usr/local/include -fPIC -Wall -g -O2 -c RandomForest.c -o RandomForest.o clang -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I"/Library/Frameworks/R.framework/Versions/3.5/Resources/library/mvtnorm/include" -I/usr/local/include -fPIC -Wall -g -O2 -c S3Classes.c -o S3Classes.o clang -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I"/Library/Frameworks/R.framework/Versions/3.5/Resources/library/mvtnorm/include" -I/usr/local/include -fPIC -Wall -g -O2 -c Splits.c -o Splits.o clang -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I"/Library/Frameworks/R.framework/Versions/3.5/Resources/library/mvtnorm/include" -I/usr/local/include -fPIC -Wall -g -O2 -c SurrogateSplits.c -o SurrogateSplits.o clang -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I"/Library/Frameworks/R.framework/Versions/3.5/Resources/library/mvtnorm/include" -I/usr/local/include -fPIC -Wall -g -O2 -c TestStatistic.c -o TestStatistic.o clang -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I"/Library/Frameworks/R.framework/Versions/3.5/Resources/library/mvtnorm/include" -I/usr/local/include -fPIC -Wall -g -O2 -c TreeGrow.c -o TreeGrow.o clang -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I"/Library/Frameworks/R.framework/Versions/3.5/Resources/library/mvtnorm/include" -I/usr/local/include -fPIC -Wall -g -O2 -c Utils.c -o Utils.o Utils.c:309:18: warning: unused variable 'pn' [-Wunused-variable] int i, j, p, pn, k, *positive; ^ 1 warning generated. clang -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/usr/local/lib -o party.so Classes.o Convenience.o Distributions.o IndependenceTest.o LinearStatistic.o Node.o Predict.o RandomForest.o S3Classes.o Splits.o SurrogateSplits.o TestStatistic.o TreeGrow.o Utils.o -L/Library/Frameworks/R.framework/Resources/lib -lRlapack -L/Library/Frameworks/R.framework/Resources/lib -lRblas -L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin15/6.1.0 -L/usr/local/gfortran/lib -lgfortran -lquadmath -lm -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation ld: warning: directory not found for option '-L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin15/6.1.0' ld: warning: directory not found for option '-L/usr/local/gfortran/lib' ld: library not found for -lgfortran clang: error: linker command failed with exit code 1 (use -v to see invocation) make: *** [party.so] Error 1 ERROR: compilation failed for package ‘party’ * removing ‘/Library/Frameworks/R.framework/Versions/3.5/Resources/library/party’ Error in i.p(...) : (converted from warning) installation of package ‘/var/folders/2w/gzmgwrcx1p7_gtrbrqp7dq9c0000gp/T//Rtmpcdr1f2/remotes136075e538fe3/party’ had non-zero exit status Any ideas of what I could be doing wrong? Thanks, Conrad ######################################################################## To unsubscribe from the FSL list, click the following link: https://www.jiscmail.ac.uk/cgi-bin/webadmin?SUBED1=FSL&A=1 ________________________________ To unsubscribe from the FSL list, click the following link: https://www.jiscmail.ac.uk/cgi-bin/webadmin?SUBED1=FSL&A=1 -- Duncan A B Mortimer DPhil MChem Senior Informatics Officer, Wellcome Centre for Integrative Neuroimaging, FMRIB, University of Oxford ######################################################################## To unsubscribe from the FSL list, click the following link: https://www.jiscmail.ac.uk/cgi-bin/webadmin?SUBED1=FSL&A=1