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Hi Nathaniel, In defence of FSLeyes, I've knocked up some instructions here. The 3D mode is admittedly a little complicated, and needs more work on combining multiple images. But I was able to get reasonable results without too much effort: https://git.fmrib.ox.ac.uk/snippets/12 Cheers, Paul On 26/03/2019, Mark Jenkinson <[log in to unmask]> wrote: > Hi, > > You need to run a separate script, which is described in the wiki - see > https://fsl.fmrib.ox.ac.uk/fsl/fslwiki/FIRST/UserGuide#Viewing_results > > All the best, > Mark > > >> On 26 Mar 2019, at 01:56, Nathaniel Lum <[log in to unmask]> >> wrote: >> >> Hi experts, >> >> I have results from FSL shape analysis with a statistical map generated. >> >> Is there a way to display these results in 3D? (example: >> http://tiny.cc/3dvisualization or http://tiny.cc/haig4y) instead of the >> orthogonal view in FSLeyes. >> I will need to overlay the statistical map I have generated onto an MNI >> image of the subcortical structures (thalamus, caudate) >> >> I have tried the 3D view in FSLeyes but have not managed to create a good >> 3D visualization. >> >> If it is not possible within FSL, could someone be so kind as to point me >> to another program that you recommend? Thank you! >> >> >> >> Best Regards, >> Nathaniel Lum >> >> ######################################################################## >> >> To unsubscribe from the FSL list, click the following link: >> https://www.jiscmail.ac.uk/cgi-bin/webadmin?SUBED1=FSL&A=1 > > ######################################################################## > > To unsubscribe from the FSL list, click the following link: > https://www.jiscmail.ac.uk/cgi-bin/webadmin?SUBED1=FSL&A=1 > ######################################################################## To unsubscribe from the FSL list, click the following link: https://www.jiscmail.ac.uk/cgi-bin/webadmin?SUBED1=FSL&A=1