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With the changes, should we consider rerunning our FIX’d fMRI data once the FSL6 fix is released?
From: FSL - FMRIB's Software Library <[log in to unmask]>
On Behalf Of West, John D.
Sent: Wednesday, January 23, 2019 3:30 PM
To: [log in to unmask]
Subject: Re: [FSL] FIX and FSL 6.0 issue with openblas library.
Thank you! That is good to know.
From: FSL - FMRIB's Software Library <[log in to unmask]>
On Behalf Of Glasser, Matthew
Sent: Friday, January 18, 2019 7:03 PM
To: [log in to unmask]
Subject: Re: [FSL] FIX and FSL 6.0 issue with openblas library.
Its a new requirement and hopefully a fix will be out soon. The blas-based maths functions are substantially faster than what was in FSL before and make melodic much more efficient.
Matt.
From: FSL - FMRIB's Software Library <[log in to unmask]> on behalf of "West, John D." <[log in to unmask]>
Reply-To: FSL - FMRIB's Software Library <[log in to unmask]>
Date: Friday, January 18, 2019 at 3:43 PM
To: "[log in to unmask]" <[log in to unmask]>
Subject: [FSL] FIX and FSL 6.0 issue with openblas library.
Hello.
When trying to use FIX with FSL 6.0 I get the following error during template generation when doing the Leave One Out testing.
Error using call_fsl (line 36)
FSL call (/bin/sh -c '. /N/soft/rhel7/fsl/6.0.0/etc/fslconf/fsl.sh; fslnvols
../10099_4/topup_nback.ica/filtered_func_data.ica/melodic_IC >
/tmp/tp1096297961633433') failed, fslnvols: error while loading shared
libraries: libopenblas.so.0: cannot open shared object file: No such file or
directory
This is obviously a library error, but I can confirm that this error only happens within the matlab part of the run. The libopenblas.so.0 file is very much available on the system and is part of my LD_LIBRARY_PATH.
For some reason matlab cannot see this library when calling FSL from within during the FIX template creation. I can confirm also that the template creation works fine using FSL 5.0.10 or 5.0.11.
Any suggestions? It seems the libopenblas.so.0 is a requirement of FSL 6 where it wasn’t for previous versions.
John D. West, M.S.
Principal Systems Analyst | Center for Neuroimaging
Indiana University School of Medicine
355 West 16th Street | GH 4100
Indianapolis, IN 46202
317-963-7510
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