Hi Arnaud,

Thee HTML pge is a bit buggy even under firefox - you should be able
to view the plot by right-clicking on the top frame and selecting
"This Frame -> Reload Frame".

Your commands run fine for me (using FSL 5.0.11). I would suggest
trying to run the pnm_evs command directly, rather than through a
script.

Cheers,

Paul

On 22/01/2019, Arnaud Boré <[log in to unmask]> wrote:
> Hi,
>
> Sorry, I uploaded again with the output.
>
> Arnaud
>
>
> Le mar. 22 janv. 2019 à 09:33, paul mccarthy <[log in to unmask]> a
> écrit :
>
>> Hi Arnaud,
>>
>> There os no output in the file you uploaded - would you be able to
>> upload the output that PNM produced?
>>
>> Cheers,
>>
>> Paul
>>
>> On 22/01/2019, Arnaud Boré <[log in to unmask]> wrote:
>> > Hi Paul,
>> >
>> > I uploaded the file using the link you provided.
>> >
>> > I tried with firefox and could not see the plot.
>> >
>> > Thank you very much for your help
>> >
>> > Arnaud
>> >
>> > Le mar. 22 janv. 2019 à 04:47, paul mccarthy <[log in to unmask]>
>> > a
>> > écrit :
>> >
>> >> Hi Arnaud,
>> >>
>> >> The link in your first email appears to be invalid - would you be able
>> >> to upload the files again, to:
>> >> https://oxfile.ox.ac.uk/oxfile/work/extBox?id=6753706EEE157A9473
>> >>
>> >> Are you using firefox to view the report? Other browsers are known to
>> >> be problematic.
>> >>
>> >> Cheers,
>> >>
>> >> Paul
>> >>
>> >> On 22/01/2019, Arnaud Boré <[log in to unmask]> wrote:
>> >> > Dear FSL experts,
>> >> >
>> >> > Sorry to ask again but can somebody take few minutes to look at this
>> >> issue
>> >> > ?
>> >> > If I were able to see the plot after the first step of the PNM it
>> would
>> >> > definitively help me understand why the pnm_evs step does not work.
>> >> >
>> >> > Thank you again in advance
>> >> > Arnaud
>> >> >
>> >> > Le jeu. 17 janv. 2019 à 15:12, Arnaud Boré <[log in to unmask]> a
>> >> écrit
>> >> > :
>> >> >
>> >> >> Dear FSL experts,
>> >> >>
>> >> >> I try to use PNM and then use the output for FEAT. I run into some
>> >> errors
>> >> >> when running pnm_evs:
>> >> >>
>> >> >> An exception has been thrown
>> >> >> Logic error:- detected by Newmat: index error: requested index = 2
>> >> >>
>> >> >> MatrixType = Rect   # Rows = 0; # Cols = 1
>> >> >> Trace: main.
>> >> >>
>> >> >> In addition the html files don't give me any plot.
>> >> >>
>> >> >> I uploaded all the files using the fsl link here
>> >> >> <https://oxfile.ox.ac.uk/oxfile/work/extBox?id=700839B35190E48BF>
>> >> >> (pnm_abore.tar.gz) as well as the code to reproduce the error.
>> >> >>
>> >> >> I would be really thankfull if you can take a little bit of time to
>> >> >> look
>> >> >> at it.
>> >> >>
>> >> >> Again thank you very much for your help
>> >> >> Arnaud
>> >> >>
>> >> >
>> >> >
>> >> > --
>> >> > Arnaud BORE
>> >> > Research assistant
>> >> > Cellulaire : (001) 514-398-5564
>> >> >
>> >> >
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>> >
>> >
>> > --
>> > Arnaud BORE
>> > Research assistant
>> > Cellulaire : (001) 514-398-5564
>> >
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>
>
> --
> Arnaud BORE
> Research assistant
> Cellulaire : (001) 514-398-5564
>
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