Dear Experts,
I recently updated FSL to version 6.0, but have run in to a problem with oxford_asl which I am not able to solve.
With FSL version 5.0 I could run the following command without any problems:
oxford_asl -i [diffdata] -o [output_directory] -m [stuc_mask_als_res] -c [M0_image] --tis [TIS] --bolus [bolus_duration] --bat [bat] --t1 [T1] --t1b [T1b] --regfrom [Pcasl_tc_mean_brain] --alpha [alpha] --casl --cmethod=voxel --fixbolus --tr [TR] --te [TE]
--cgain 10
However, using the new FSL version 6.0 I get the error message which is displayed at the end of this message. Even if I simplify the command by only analysis of the diffdata without calibration and registrations I still get the same error. So I assume the problem
is within the analysis part, but I don't know why the error arises in this FSL version.
I am sure that all images I use are in the same orientation. It almost seem that this version cannot cope with my ASL data.
Could someone please elaborate the problem and perhaps has a solution?
Thanks in advance.
Best regards,
Jordi Kleinloog
PhD candidate
Maastricht university
Welcome to FABBER v2.0
Logfile started: /tmp/fsl_DEYlaR_ox_asl/basil/step1/logfile
Start time: Fri Nov 2 13:33:59 2018
FABBER release v2.0
Forward Model version:
$Id:
fwdmodel_asl_grase.cc,v 1.22 2013/09/04 15:13:00 chappell Exp $
Loading mask data from '/tmp/fsl_DEYlaR_ox_asl/mask'
Loading data from 'analysis_tgse_pcasl_high_gain/Pcasl_diffdata'
error: subview::diag(): requested diagonal out of bounds (many times!)
error: copy into submatrix: incompatible matrix dimensions: 10x1 and 13x1
STL exception caught in fabber:
copy into submatrix: incompatible matrix dimensions: 10x1 and 13x1
Logfile was: /tmp/fsl_utDfkY_ox_asl/basil/step1/logfile
Could not find a supported file with prefix "/tmp/fsl_utDfkY_ox_asl/basil/step1/finalMVN"
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