Hello fsl experts,
I'm attempting to run registration for some of my data using FEAT. Unfortunately, when ever I run FEAT from the gui I receive the following output message:
Progress Report / Log
Started at Tue Nov 13 11:16:57 EST 2018
Feat main script
/bin/cp /tmp/feat_nEWb1t.fsf design.fsf
mkdir .files;cp /usr/local/fsl/doc/fsl.css .files;cp -r /usr/local/fsl/doc/images .files/images
/usr/local/fsl/bin/fsl_sub -T 10 -l logs -N feat0_init /usr/local/fsl/bin/feat /media/brain3dviz/IkhlasHashi/Data_/sub-1B/func/+.feat/design.fsf -D /media/brain3dviz/IkhlasHashi/Data_/sub-1B/func/+.feat -I 1 -init
20509
/usr/local/fsl/bin/fsl_sub -T 267 -l logs -N feat2_pre -j 20509 /usr/local/fsl/bin/feat /media/brain3dviz/IkhlasHashi/Data_/sub-1B/func/+.feat/design.fsf -D /media/brain3dviz/IkhlasHashi/Data_/sub-1B/func/+.feat -I 1 -prestats
child process exited abnormally
while executing
"if { [ catch {
for { set argindex 1 } { $argindex < $argc } { incr argindex 1 } {
switch -- [ lindex $argv $argindex ] {
-I {
incr arginde..."
(file "/usr/local/fsl/bin/feat" line 312)
FATAL ERROR ENCOUNTERED:
COMMAND:
/usr/local/fsl/bin/fsl_sub -T 267 -l logs -N feat2_pre -j 20509 /usr/local/fsl/bin/feat /media/brain3dviz/IkhlasHashi/Data_/sub-1B/func/+.feat/design.fsf -D /media/brain3dviz/IkhlasHashi/Data_/sub-1B/func/+.feat -I 1 -prestats
ERROR MESSAGE:
child process exited abnormally
END OF ERROR MESSAGE
Initialisation
/usr/local/fsl/bin/fslmaths /media/brain3dviz/IkhlasHashi/Data_/sub-1B/func/sub-1B_task-comparison_bold_4d prefiltered_func_data -odt float
Total original volumes = 600
/usr/local/fsl/bin/fslroi prefiltered_func_data example_func 300 1
Preprocessing:Stage 1
/usr/local/fsl/bin/mainfeatreg -F 6.00 -d /media/brain3dviz/IkhlasHashi/Data_/sub-1B/func/+.feat -l /media/brain3dviz/IkhlasHashi/Data_/sub-1B/func/+.feat/logs/feat2_pre -R /media/brain3dviz/IkhlasHashi/Data_/sub-1B/func/+.feat/report_unwarp.html -r /media/brain3dviz/IkhlasHashi/Data_/sub-1B/func/+.feat/report_reg.html -i /media/brain3dviz/IkhlasHashi/Data_/sub-1B/func/+.feat/example_func.nii.gz -h /media/brain3dviz/IkhlasHashi/Data_/sub-1B/anat/sub-1B_T1w_brain -w BBR -x 90 -s /usr/local/fsl/data/standard/MNI152_T1_2mm_brain -y 12 -z 90
Option -F ( FEAT version parameter ) selected with argument "6.00"
Option -d ( output directory ) selected with argument "/media/brain3dviz/IkhlasHashi/Data_/sub-1B/func/+.feat"
Option -l ( logfile )input with argument "/media/brain3dviz/IkhlasHashi/Data_/sub-1B/func/+.feat/logs/feat2_pre"
Option -R ( html unwarping report ) selected with argument "/media/brain3dviz/IkhlasHashi/Data_/sub-1B/func/+.feat/report_unwarp.html"
Option -r ( html registration report ) selected with argument "/media/brain3dviz/IkhlasHashi/Data_/sub-1B/func/+.feat/report_reg.html"
Option -i ( main input ) input with argument "/media/brain3dviz/IkhlasHashi/Data_/sub-1B/func/+.feat/example_func.nii.gz"
Option -h ( high-res structural image ) selected with argument "/media/brain3dviz/IkhlasHashi/Data_/sub-1B/anat/sub-1B_T1w_brain"
Option -w ( highres dof ) selected with argument "BBR"
Option -x ( highres search ) selected with argument "90"
Option -s ( standard image ) selected with argument "/usr/local/fsl/data/standard/MNI152_T1_2mm_brain"
Option -y ( standard dof ) selected with argument "12"
Option -z ( standard search ) selected with argument "90"
Registration
/bin/mkdir -p /media/brain3dviz/IkhlasHashi/Data_/sub-1B/func/+.feat/reg
/usr/local/fsl/bin/mainfeatreg: line 504: /usr/local/fsl/bin/imcp: No such file or directory
/usr/local/fsl/bin/fslmaths /media/brain3dviz/IkhlasHashi/Data_/sub-1B/anat/sub-1B_T1w_brain highres
/usr/local/fsl/bin/fslmaths /media/brain3dviz/IkhlasHashi/Data_/sub-1B/anat/sub-1B_T1w highres_head
/usr/local/fsl/bin/fslmaths /usr/local/fsl/data/standard/MNI152_T1_2mm_brain standard
did not find file: example_func2highres.mat. Generating transform.
/usr/local/fsl/bin/epi_reg --epi=example_func --t1=highres_head --t1brain=highres --out=example_func2highres
Image Exception : #22 :: ERROR: Could not open image example_func
terminate called after throwing an instance of 'RBD_COMMON::BaseException'
/usr/local/fsl/bin/epi_reg: line 331: 21397 Aborted (core dumped) $FSLDIR/bin/flirt -ref ${vrefbrain} -in ${vepi} -dof 6 -omat ${vout}_init.mat
Image Exception : #22 :: ERROR: Could not open image example_func
terminate called after throwing an instance of 'RBD_COMMON::BaseException'
/usr/local/fsl/bin/epi_reg: line 392: 21399 Aborted (core dumped) $FSLDIR/bin/flirt -ref ${vrefhead} -in ${vepi} -dof 6 -cost bbr -wmseg ${vout}_fast_wmseg -init ${vout}_init.mat -omat ${vout}.mat -out ${vout} -schedule ${FSLDIR}/etc/flirtsch/bbr.sch
Could not open matrix file example_func2highres.mat
Image Exception : #22 :: ERROR: Could not open image example_func
terminate called after throwing an instance of 'RBD_COMMON::BaseException'
/usr/local/fsl/bin/epi_reg: line 392: 21401 Aborted (core dumped) $FSLDIR/bin/applywarp -i ${vepi} -r ${vrefhead} -o ${vout} --premat=${vout}.mat --interp=spline
Running FAST segmentation FLIRT pre-alignment Running BBR
/usr/local/fsl/bin/slicer example_func2highres highres -s 2 -x 0.35 sla.png -x 0.45 slb.png -x 0.55 slc.png -x 0.65 sld.png -y 0.35 sle.png -y 0.45 slf.png -y 0.55 slg.png -y 0.65 slh.png -z 0.35 sli.png -z 0.45 slj.png -z 0.55 slk.png -z 0.65 sll.png ; /usr/local/fsl/bin/pngappend sla.png + slb.png + slc.png + sld.png + sle.png + slf.png + slg.png + slh.png + sli.png + slj.png + slk.png + sll.png example_func2highres1.png ; /usr/local/fsl/bin/slicer highres example_func2highres -s 2 -x 0.35 sla.png -x 0.45 slb.png -x 0.55 slc.png -x 0.65 sld.png -y 0.35 sle.png -y 0.45 slf.png -y 0.55 slg.png -y 0.65 slh.png -z 0.35 sli.png -z 0.45 slj.png -z 0.55 slk.png -z 0.65 sll.png ; /usr/local/fsl/bin/pngappend sla.png + slb.png + slc.png + sld.png + sle.png + slf.png + slg.png + slh.png + sli.png + slj.png + slk.png + sll.png example_func2highres2.png ; /usr/local/fsl/bin/pngappend example_func2highres1.png - example_func2highres2.png example_func2highres.png; /bin/rm -f sl?.png example_func2highres2.png
Image Exception : #22 :: ERROR: Could not open image example_func2highres
Cannot open sla.png for reading
Segmentation fault (core dumped)
Cannot open example_func2highres1.png for reading
Segmentation fault (core dumped)
Error in slicer input, exiting...
/bin/rm example_func2highres1.png
/bin/rm: cannot remove 'example_func2highres1.png': No such file or directory
did not find file: highres2standard.mat. Generating transform.
/usr/local/fsl/bin/flirt -in highres -ref standard -out highres2standard -omat highres2standard.mat -cost corratio -dof 12 -searchrx -90 90 -searchry -90 90 -searchrz -90 90 -interp trilinear
/usr/local/fsl/bin/convert_xfm -inverse -omat standard2highres.mat highres2standard.mat
/usr/local/fsl/bin/slicer highres2standard standard -s 2 -x 0.35 sla.png -x 0.45 slb.png -x 0.55 slc.png -x 0.65 sld.png -y 0.35 sle.png -y 0.45 slf.png -y 0.55 slg.png -y 0.65 slh.png -z 0.35 sli.png -z 0.45 slj.png -z 0.55 slk.png -z 0.65 sll.png ; /usr/local/fsl/bin/pngappend sla.png + slb.png + slc.png + sld.png + sle.png + slf.png + slg.png + slh.png + sli.png + slj.png + slk.png + sll.png highres2standard1.png ; /usr/local/fsl/bin/slicer standard highres2standard -s 2 -x 0.35 sla.png -x 0.45 slb.png -x 0.55 slc.png -x 0.65 sld.png -y 0.35 sle.png -y 0.45 slf.png -y 0.55 slg.png -y 0.65 slh.png -z 0.35 sli.png -z 0.45 slj.png -z 0.55 slk.png -z 0.65 sll.png ; /usr/local/fsl/bin/pngappend sla.png + slb.png + slc.png + sld.png + sle.png + slf.png + slg.png + slh.png + sli.png + slj.png + slk.png + sll.png highres2standard2.png ; /usr/local/fsl/bin/pngappend highres2standard1.png - highres2standard2.png highres2standard.png; /bin/rm -f sl?.png highres2standard2.png
/bin/rm highres2standard1.png
/usr/local/fsl/bin/convert_xfm -omat example_func2standard.mat -concat highres2standard.mat example_func2highres.mat
Could not open matrix file example_func2highres.mat
Cannot read input-matrix
did not find file: example_func2standard.mat. Generating transform.
/usr/local/fsl/bin/flirt -in example_func -ref standard -out example_func2standard -omat example_func2standard.mat -cost corratio -dof -searchrx - -searchry - -searchrz - -interp trilinear
Unrecognised option -
/usr/local/fsl/bin/slicer example_func2standard standard -s 2 -x 0.35 sla.png -x 0.45 slb.png -x 0.55 slc.png -x 0.65 sld.png -y 0.35 sle.png -y 0.45 slf.png -y 0.55 slg.png -y 0.65 slh.png -z 0.35 sli.png -z 0.45 slj.png -z 0.55 slk.png -z 0.65 sll.png ; /usr/local/fsl/bin/pngappend sla.png + slb.png + slc.png + sld.png + sle.png + slf.png + slg.png + slh.png + sli.png + slj.png + slk.png + sll.png example_func2standard1.png ; /usr/local/fsl/bin/slicer standard example_func2standard -s 2 -x 0.35 sla.png -x 0.45 slb.png -x 0.55 slc.png -x 0.65 sld.png -y 0.35 sle.png -y 0.45 slf.png -y 0.55 slg.png -y 0.65 slh.png -z 0.35 sli.png -z 0.45 slj.png -z 0.55 slk.png -z 0.65 sll.png ; /usr/local/fsl/bin/pngappend sla.png + slb.png + slc.png + sld.png + sle.png + slf.png + slg.png + slh.png + sli.png + slj.png + slk.png + sll.png example_func2standard2.png ; /usr/local/fsl/bin/pngappend example_func2standard1.png - example_func2standard2.png example_func2standard.png; /bin/rm -f sl?.png example_func2standard2.png
Image Exception : #22 :: ERROR: Could not open image example_func2standard
Cannot open sla.png for reading
Segmentation fault (core dumped)
Cannot open example_func2standard1.png for reading
Segmentation fault (core dumped)
Error in slicer input, exiting...
Preprocessing:Stage 2
/usr/local/fsl/bin/mcflirt -in prefiltered_func_data -out prefiltered_func_data_mcf -mats -plots -reffile example_func -rmsrel -rmsabs -spline_final
/bin/mkdir -p mc ; /bin/mv -f prefiltered_func_data_mcf.mat prefiltered_func_data_mcf.par prefiltered_func_data_mcf_abs.rms prefiltered_func_data_mcf_abs_mean.rms prefiltered_func_data_mcf_rel.rms prefiltered_func_data_mcf_rel_mean.rms mc
/usr/local/fsl/bin/fsl_tsplot -i prefiltered_func_data_mcf.par -t 'MCFLIRT estimated rotations (radians)' -u 1 --start=1 --finish=3 -a x,y,z -w 640 -h 144 -o rot.png
/usr/local/fsl/bin/fsl_tsplot -i prefiltered_func_data_mcf.par -t 'MCFLIRT estimated translations (mm)' -u 1 --start=4 --finish=6 -a x,y,z -w 640 -h 144 -o trans.png
/usr/local/fsl/bin/fsl_tsplot -i prefiltered_func_data_mcf_abs.rms,prefiltered_func_data_mcf_rel.rms -t 'MCFLIRT estimated mean displacement (mm)' -u 1 -w 640 -h 144 -a absolute,relative -o disp.png
/usr/local/fsl/bin/fslmaths prefiltered_func_data_mcf -Tmean mean_func
/usr/local/fsl/bin/bet2 mean_func mask -f 0.3 -n -m; /usr/local/fsl/bin/immv mask_mask mask
sh: 1: /usr/local/fsl/bin/immv: not found
FATAL ERROR ENCOUNTERED:
COMMAND:
/usr/local/fsl/bin/bet2 mean_func mask -f 0.3 -n -m; /usr/local/fsl/bin/immv mask_mask mask
ERROR MESSAGE:
child process exited abnormally
END OF ERROR MESSAGE
Preprocessing:Stage 1
/usr/local/fsl/bin/mainfeatreg -F 6.00 -d /media/brain3dviz/IkhlasHashi/Data_/sub-1B/func/+.feat -l /media/brain3dviz/IkhlasHashi/Data_/sub-1B/func/+.feat/logs/feat2_pre -R /media/brain3dviz/IkhlasHashi/Data_/sub-1B/func/+.feat/report_unwarp.html -r /media/brain3dviz/IkhlasHashi/Data_/sub-1B/func/+.feat/report_reg.html -i /media/brain3dviz/IkhlasHashi/Data_/sub-1B/func/+.feat/example_func.nii.gz -h /media/brain3dviz/IkhlasHashi/Data_/sub-1B/anat/sub-1B_T1w_brain -w BBR -x 90 -s /usr/local/fsl/data/standard/MNI152_T1_2mm_brain -y 12 -z 90
Option -F ( FEAT version parameter ) selected with argument "6.00"
Option -d ( output directory ) selected with argument "/media/brain3dviz/IkhlasHashi/Data_/sub-1B/func/+.feat"
Option -l ( logfile )input with argument "/media/brain3dviz/IkhlasHashi/Data_/sub-1B/func/+.feat/logs/feat2_pre"
Option -R ( html unwarping report ) selected with argument "/media/brain3dviz/IkhlasHashi/Data_/sub-1B/func/+.feat/report_unwarp.html"
Option -r ( html registration report ) selected with argument "/media/brain3dviz/IkhlasHashi/Data_/sub-1B/func/+.feat/report_reg.html"
Option -i ( main input ) input with argument "/media/brain3dviz/IkhlasHashi/Data_/sub-1B/func/+.feat/example_func.nii.gz"
Option -h ( high-res structural image ) selected with argument "/media/brain3dviz/IkhlasHashi/Data_/sub-1B/anat/sub-1B_T1w_brain"
Option -w ( highres dof ) selected with argument "BBR"
Option -x ( highres search ) selected with argument "90"
Option -s ( standard image ) selected with argument "/usr/local/fsl/data/standard/MNI152_T1_2mm_brain"
Option -y ( standard dof ) selected with argument "12"
Option -z ( standard search ) selected with argument "90"
Registration
/bin/mkdir -p /media/brain3dviz/IkhlasHashi/Data_/sub-1B/func/+.feat/reg
/usr/local/fsl/bin/mainfeatreg: line 504: /usr/local/fsl/bin/imcp: No such file or directory
/usr/local/fsl/bin/fslmaths /media/brain3dviz/IkhlasHashi/Data_/sub-1B/anat/sub-1B_T1w_brain highres
/usr/local/fsl/bin/fslmaths /media/brain3dviz/IkhlasHashi/Data_/sub-1B/anat/sub-1B_T1w highres_head
/usr/local/fsl/bin/fslmaths /usr/local/fsl/data/standard/MNI152_T1_2mm_brain standard
did not find file: example_func2highres.mat. Generating transform.
/usr/local/fsl/bin/epi_reg --epi=example_func --t1=highres_head --t1brain=highres --out=example_func2highres
Image Exception : #22 :: ERROR: Could not open image example_func
terminate called after throwing an instance of 'RBD_COMMON::BaseException'
/usr/local/fsl/bin/epi_reg: line 331: 23797 Aborted (core dumped) $FSLDIR/bin/flirt -ref ${vrefbrain} -in ${vepi} -dof 6 -omat ${vout}_init.mat
Image Exception : #22 :: ERROR: Could not open image example_func
terminate called after throwing an instance of 'RBD_COMMON::BaseException'
/usr/local/fsl/bin/epi_reg: line 392: 23799 Aborted (core dumped) $FSLDIR/bin/flirt -ref ${vrefhead} -in ${vepi} -dof 6 -cost bbr -wmseg ${vout}_fast_wmseg -init ${vout}_init.mat -omat ${vout}.mat -out ${vout} -schedule ${FSLDIR}/etc/flirtsch/bbr.sch
Could not open matrix file example_func2highres.mat
Image Exception : #22 :: ERROR: Could not open image example_func
terminate called after throwing an instance of 'RBD_COMMON::BaseException'
/usr/local/fsl/bin/epi_reg: line 392: 23801 Aborted (core dumped) $FSLDIR/bin/applywarp -i ${vepi} -r ${vrefhead} -o ${vout} --premat=${vout}.mat --interp=spline
Running FAST segmentation FLIRT pre-alignment Running BBR
/usr/local/fsl/bin/slicer example_func2highres highres -s 2 -x 0.35 sla.png -x 0.45 slb.png -x 0.55 slc.png -x 0.65 sld.png -y 0.35 sle.png -y 0.45 slf.png -y 0.55 slg.png -y 0.65 slh.png -z 0.35 sli.png -z 0.45 slj.png -z 0.55 slk.png -z 0.65 sll.png ; /usr/local/fsl/bin/pngappend sla.png + slb.png + slc.png + sld.png + sle.png + slf.png + slg.png + slh.png + sli.png + slj.png + slk.png + sll.png example_func2highres1.png ; /usr/local/fsl/bin/slicer highres example_func2highres -s 2 -x 0.35 sla.png -x 0.45 slb.png -x 0.55 slc.png -x 0.65 sld.png -y 0.35 sle.png -y 0.45 slf.png -y 0.55 slg.png -y 0.65 slh.png -z 0.35 sli.png -z 0.45 slj.png -z 0.55 slk.png -z 0.65 sll.png ; /usr/local/fsl/bin/pngappend sla.png + slb.png + slc.png + sld.png + sle.png + slf.png + slg.png + slh.png + sli.png + slj.png + slk.png + sll.png example_func2highres2.png ; /usr/local/fsl/bin/pngappend example_func2highres1.png - example_func2highres2.png example_func2highres.png; /bin/rm -f sl?.png example_func2highres2.png
Image Exception : #22 :: ERROR: Could not open image example_func2highres
Cannot open sla.png for reading
Segmentation fault (core dumped)
Cannot open example_func2highres1.png for reading
Segmentation fault (core dumped)
Error in slicer input, exiting...
/bin/rm example_func2highres1.png
/bin/rm: cannot remove 'example_func2highres1.png': No such file or directory
did not find file: highres2standard.mat. Generating transform.
/usr/local/fsl/bin/flirt -in highres -ref standard -out highres2standard -omat highres2standard.mat -cost corratio -dof 12 -searchrx -90 90 -searchry -90 90 -searchrz -90 90 -interp trilinear
/usr/local/fsl/bin/convert_xfm -inverse -omat standard2highres.mat highres2standard.mat
/usr/local/fsl/bin/slicer highres2standard standard -s 2 -x 0.35 sla.png -x 0.45 slb.png -x 0.55 slc.png -x 0.65 sld.png -y 0.35 sle.png -y 0.45 slf.png -y 0.55 slg.png -y 0.65 slh.png -z 0.35 sli.png -z 0.45 slj.png -z 0.55 slk.png -z 0.65 sll.png ; /usr/local/fsl/bin/pngappend sla.png + slb.png + slc.png + sld.png + sle.png + slf.png + slg.png + slh.png + sli.png + slj.png + slk.png + sll.png highres2standard1.png ; /usr/local/fsl/bin/slicer standard highres2standard -s 2 -x 0.35 sla.png -x 0.45 slb.png -x 0.55 slc.png -x 0.65 sld.png -y 0.35 sle.png -y 0.45 slf.png -y 0.55 slg.png -y 0.65 slh.png -z 0.35 sli.png -z 0.45 slj.png -z 0.55 slk.png -z 0.65 sll.png ; /usr/local/fsl/bin/pngappend sla.png + slb.png + slc.png + sld.png + sle.png + slf.png + slg.png + slh.png + sli.png + slj.png + slk.png + sll.png highres2standard2.png ; /usr/local/fsl/bin/pngappend highres2standard1.png - highres2standard2.png highres2standard.png; /bin/rm -f sl?.png highres2standard2.png
/bin/rm highres2standard1.png
/usr/local/fsl/bin/convert_xfm -omat example_func2standard.mat -concat highres2standard.mat example_func2highres.mat
Could not open matrix file example_func2highres.mat
Cannot read input-matrix
did not find file: example_func2standard.mat. Generating transform.
/usr/local/fsl/bin/flirt -in example_func -ref standard -out example_func2standard -omat example_func2standard.mat -cost corratio -dof -searchrx - -searchry - -searchrz - -interp trilinear
Unrecognised option -
/usr/local/fsl/bin/slicer example_func2standard standard -s 2 -x 0.35 sla.png -x 0.45 slb.png -x 0.55 slc.png -x 0.65 sld.png -y 0.35 sle.png -y 0.45 slf.png -y 0.55 slg.png -y 0.65 slh.png -z 0.35 sli.png -z 0.45 slj.png -z 0.55 slk.png -z 0.65 sll.png ; /usr/local/fsl/bin/pngappend sla.png + slb.png + slc.png + sld.png + sle.png + slf.png + slg.png + slh.png + sli.png + slj.png + slk.png + sll.png example_func2standard1.png ; /usr/local/fsl/bin/slicer standard example_func2standard -s 2 -x 0.35 sla.png -x 0.45 slb.png -x 0.55 slc.png -x 0.65 sld.png -y 0.35 sle.png -y 0.45 slf.png -y 0.55 slg.png -y 0.65 slh.png -z 0.35 sli.png -z 0.45 slj.png -z 0.55 slk.png -z 0.65 sll.png ; /usr/local/fsl/bin/pngappend sla.png + slb.png + slc.png + sld.png + sle.png + slf.png + slg.png + slh.png + sli.png + slj.png + slk.png + sll.png example_func2standard2.png ; /usr/local/fsl/bin/pngappend example_func2standard1.png - example_func2standard2.png example_func2standard.png; /bin/rm -f sl?.png example_func2standard2.png
Image Exception : #22 :: ERROR: Could not open image example_func2standard
Cannot open sla.png for reading
Segmentation fault (core dumped)
Cannot open example_func2standard1.png for reading
Segmentation fault (core dumped)
Error in slicer input, exiting...
Preprocessing:Stage 2
/usr/local/fsl/bin/mcflirt -in prefiltered_func_data -out prefiltered_func_data_mcf -mats -plots -reffile example_func -rmsrel -rmsabs -spline_final
/bin/mkdir -p mc ; /bin/mv -f prefiltered_func_data_mcf.mat prefiltered_func_data_mcf.par prefiltered_func_data_mcf_abs.rms prefiltered_func_data_mcf_abs_mean.rms prefiltered_func_data_mcf_rel.rms prefiltered_func_data_mcf_rel_mean.rms mc
/usr/local/fsl/bin/fsl_tsplot -i prefiltered_func_data_mcf.par -t 'MCFLIRT estimated rotations (radians)' -u 1 --start=1 --finish=3 -a x,y,z -w 640 -h 144 -o rot.png
/usr/local/fsl/bin/fsl_tsplot -i prefiltered_func_data_mcf.par -t 'MCFLIRT estimated translations (mm)' -u 1 --start=4 --finish=6 -a x,y,z -w 640 -h 144 -o trans.png
/usr/local/fsl/bin/fsl_tsplot -i prefiltered_func_data_mcf_abs.rms,prefiltered_func_data_mcf_rel.rms -t 'MCFLIRT estimated mean displacement (mm)' -u 1 -w 640 -h 144 -a absolute,relative -o disp.png
/usr/local/fsl/bin/fslmaths prefiltered_func_data_mcf -Tmean mean_func
/usr/local/fsl/bin/bet2 mean_func mask -f 0.3 -n -m; /usr/local/fsl/bin/immv mask_mask mask
sh: 1: /usr/local/fsl/bin/immv: not found
FATAL ERROR ENCOUNTERED:
COMMAND:
/usr/local/fsl/bin/bet2 mean_func mask -f 0.3 -n -m; /usr/local/fsl/bin/immv mask_mask mask
ERROR MESSAGE:
child process exited abnormally
END OF ERROR MESSAGE
child process exited abnormally
while executing
"if { [ catch {
for { set argindex 1 } { $argindex < $argc } { incr argindex 1 } {
switch -- [ lindex $argv $argindex ] {
-I {
incr arginde..."
(file "/usr/local/fsl/bin/feat" line 312)
Error encountered while running in main feat script, halting.
child process exited abnormally
I loaded my 4d functional, as well as my structural.
Any suggestions on what steps I should take next would be much appreciated!
Thank you so much for your time.
Sincerely,
Hashi
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