I recently updated fsl on my computer and am trying to run eddy on my computer with
eddy_openmp --imain=DTI_analysis.nii.gz --mask=COPY_b0_brain_0.4_mask_eroded.nii.gz --acqp=acqp.txt --index=index.txt --bvecs=bvec.txt --bvals=bvalue.txt --repol --field=/Volumes/DANIEL/${subj}/${subj}.${cond}/field_map/FieldMap2dti* --out=eddy_corrected_data
I get the error...
eddy_openmp: No match.
Before the update I used
eddy --imain=DTI_analysis.nii.gz --mask=COPY_b0_brain_0.4_mask_eroded.nii.gz --acqp=acqp.txt --index=index.txt --bvecs=bvec.txt --bvals=bvalue.txt --repol --field=/Volumes/DANIEL/${subj}/${subj}.${cond}/field_map/FieldMap2dti* --out=eddy_corrected_data
but now I get the error...
subj = AES107 , cond = Ex
eddy: No match.
For some reason this specific computer would only work with eddy and not eddy_openmp before the update. Now neither works. I know I should be using eddy_openmp but it seems like the library doesn't have it on this computer.
[hlhp-105:DANIEL/scripts/5] administrator% eddy
eddy eddy_combine eddy_cuda eddy_squad
eddy.sh eddy_correct eddy_quad
Thanks for any help you can provide with updating the library or fixing the issue with running eddy.
Daniel Callow
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