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Hi Do you mean ximdisp ? The MRC format is pretty standard and should open in most EM packages (IMOD ,EMAN2 etc) . 1.What format are your co-ordinates in ? (.box ,.star,spider) ? Sincerely Joshua On Sun, 21 Oct 2018, 22:11 Khursheed Ali, <[log in to unmask]> wrote: > Hi, > > I'm doing my master's from "Indian Institute of Technology Bombay (IIT > Bombay), India" university in the field of Cryo-EM. Objective of my work is > to develop robust algorithm for "Particle picking" & "3D tomographic > reconstruction" in Cryo-EM. We have few hundred micrographs (.mrc format) > and their particles markings taken from some external Biology LAB. > > Problem which we are facing is that, Biology LAB people had marked > particles on micrograph (.mrc format) done using "*Ximdis*" software. > They are saying that these micrograph and their particle marking can be > opened using Ximdis or CCP-EM tool. As we are new to CCP-EM tool, we are > not able to open these micrographs and their particle marking. Also CCP-EM > is crashing or sometime gives error, when micrograph of very big dimension > i.e 7000x7000 is opened. Below are the few questions for which we are > searching for the answers. > > 1. From where we can get XimDis tool? Because we are not able find Ximdis. > If there is any download site or link then please let us know. > > 2. How to open micrograph and their respective marking file (marking is > done using Ximdis)? > > 3. Also, if we just open big micrograph (7000x7000) from "image" section > (bottom-right menu) of CCP-EM 1.1 then it gives error. > > > Thanks and Regards, > > Khursheed Ali, > M.Tech. - Computer Science and Engineering, > > Indian Institute of Technology Bombay (IIT Bombay), > Mumbai, India > > ------------------------------ > > To unsubscribe from the CCPEM list, click the following link: > https://www.jiscmail.ac.uk/cgi-bin/webadmin?SUBED1=CCPEM&A=1 > ######################################################################## To unsubscribe from the CCPEM list, click the following link: https://www.jiscmail.ac.uk/cgi-bin/webadmin?SUBED1=CCPEM&A=1