If you got the index, acqparams and other parameters correct, it works perfectly for multi-shell data.

Mahmoud

On Mon, Sep 3, 2018 at 7:53 AM Neda Mohammadi <[log in to unmask]> wrote:

Hi everyone,

We have a multi-shell DTI data (AP: 5,b=0; 64, b=1000, and 64,b=2000; and PA). we do preprocessing on our data with topup and eddy (https://fsl.fmrib.ox.ac.uk/fslcourse/lectures/practicals/fdt1/index.html).

Is this method (topup and eddy) suitable for multi-shell data preprocessing?

Thank you for any help you can offer.

--

Best Regards,

Neda

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