Print

Print


Hello FSL experts,

I am running into a problem trying to run eddy on my data. I'm trying to run data acquired with a Philips scanner, (single shot, echo spacing=.69902, epi factor=41, per MR tech). Our data has 32 DW volumes, plus one b0 acquired at the end, A>P. Unfortunately only the single b0 and no other scans running in the other direction that could be run through topup. My command is:

eddy_openmp --imain=data.nii --mask=b0_ss_mask.nii --index=index.txt --acqp=acqp.txt --bvecs=data.bvec --bvals=data.bval --out

It runs for a few minutes until it tries to calculate parameter updates, then prints "Killed" and terminates. Bvals and bvecs reflect the number of volumes in data, acqp (dwelltime=0.027) and index should accurately reflect the acquisition parameters. 

Your help is greatly appreciated.

JoshRobinson

########################################################################

To unsubscribe from the FSL list, click the following link:
https://www.jiscmail.ac.uk/cgi-bin/webadmin?SUBED1=FSL&A=1