Hi Matthew, Thank you for your response! I just checked and both of those files do exist. Any suggestions on where to go from here? Thanks! Maya ________________________________ From: FSL - FMRIB's Software Library <[log in to unmask]> on behalf of Matthew Webster <[log in to unmask]> Sent: August 8, 2018 5:08:18 AM To: [log in to unmask] Subject: Re: [FSL] Dual Regression Resting State ICA Hello, It looks like two of your inputs may have a problem - can you check if these files exist?: ==> drA.e11006.1 <== Cannot open volume /Users/neurodetect/Desktop/rsfMRI_ND_MS/ND_001/func/func.feat/ICA_AROMA/denoised_func_data_nonaggr_results+.ica/reg_standard/filtered_func_data for reading! ==> drA.e11006.2 <== Cannot open volume /Users/neurodetect/Desktop/rsfMRI_ND_MS/ND_002/func/func.feat/ICA_AROMA/denoised_func_data_nonaggr_results+.ica/reg_standard/filtered_func_data for reading! Kind Regards Matthew -------------------------------- Dr Matthew Webster FMRIB Centre John Radcliffe Hospital University of Oxford > On 7 Aug 2018, at 19:57, Maya Sohn <[log in to unmask]> wrote: > > Hi All, > > We are trying to run a dual regression on resting state ICA data using this command: > > dual_regression groupmelodic.ica/melodic_IC.nii.gz 1 NewModel_Jul17.mat NewModel_Jul17.con 5000 dualreg_output `cat ICA_List.txt` > > > It seems to work fine and gives us stage 1 and stage 2 results however it can't output stage 3 files. The only error that we can see is in drB and states that it cannot open volume mask ALL for reading even though the file has been created. > > > Here is a link to the scripts and logs that the analysis has created so you can have a look: > https://drive.google.com/open?id=1-2XlnM7h4OO2nNM66UX6Iq9A8mFH_nrR > > > > Thank you in advance! > > Maya > > ######################################################################## > > To unsubscribe from the FSL list, click the following link: > https://www.jiscmail.ac.uk/cgi-bin/webadmin?SUBED1=FSL&A=1 ######################################################################## To unsubscribe from the FSL list, click the following link: https://www.jiscmail.ac.uk/cgi-bin/webadmin?SUBED1=FSL&A=1 ######################################################################## To unsubscribe from the FSL list, click the following link: https://www.jiscmail.ac.uk/cgi-bin/webadmin?SUBED1=FSL&A=1