 |
 |
Hi Mark, I do fully appreciate your helpful answer, sorry if I have responded this late. Thanks, Ali On Sun, Jul 29, 2018 at 2:03 PM Mark Jenkinson <[log in to unmask]> wrote: > Hi, > > I think you'll find it easier to use the -applyisoxfm option in FLIRT, as > this will do it all for you. > > Alternatively, use fslcreatehd and just match the spatial FOV and copy the > tsize from the original (number of timepoints). The datatype doesn't > matter in this case, but I'd generally use 16 (float). > > All the best, > Mark > > > > On 27 Jul 2018, at 13:26, Mohammadali Javanray < > [log in to unmask]> wrote: > > > > Dear FSL experts, > > Hi. > > > > I want to resample my functional data(using ABIDE data set), from 3.5 > mm*3.5 mm*3.5 mm to 3 mm*3 mm*3 mm using fslcreatehd command for > > further use in flirt command " flirt -in newvol -ref refvol -out > outvol -init invol2refvol.mat -applyxfm " as a reference image or mask . > > > > The questions is that fslcreatehd have some parameters I do not know > how to find from ABIDE dataset scan parameters (<xsize> <ysize> <zsize> > > <tsize> <datatype>). > > > > Should I use "(rest FOV)*(number of rest slices)" as "xsize* ysize* > zsize" ?? > > what about <tsize> and <datatype> > > > > Your guidance would be fully appreciated. > > Ali. > > > > ######################################################################## > > > > To unsubscribe from the FSL list, click the following link: > > https://www.jiscmail.ac.uk/cgi-bin/webadmin?SUBED1=FSL&A=1 > > ######################################################################## > > To unsubscribe from the FSL list, click the following link: > https://www.jiscmail.ac.uk/cgi-bin/webadmin?SUBED1=FSL&A=1 > ######################################################################## To unsubscribe from the FSL list, click the following link: https://www.jiscmail.ac.uk/cgi-bin/webadmin?SUBED1=FSL&A=1