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Dear Janine, Yes, it does, it's there and as far as i can see not corrupted. On Wed, Aug 8, 2018 at 12:11 PM Janine Bijsterbosch < [log in to unmask]> wrote: > Hi, > > Ok, does the following file exist in the correct full path? > > > /mnt/hgfs/Bswift/nnaor/PhD/group_analysis/RSconcat.gica/groupmelodic.ica/melodic_IC.nii.gz.sum/0108.png > > Cheers, > > Janine > > > On 8 Aug 2018, at 16:37, Navot Naor <[log in to unmask]> wrote: > > Dear Janin, > > I did, i got that error after running slices_summary > > On Wed, Aug 8, 2018 at 11:25 AM Janine Bijsterbosch < > [log in to unmask]> wrote: > >> Hi, >> >> You need to run the following command (outside matlab) to generate >> summary pictures that Matlab will load: >> >> slices_summary <group_maps> 4 $FSLDIR/data/standard/MNI152_T1_2mm >> <group_maps>.sum >> >> This will generate a folder with png images. >> >> Best wishes, >> >> Janine >> >> >> >> On 8 Aug 2018, at 16:05, Navot Naor <[log in to unmask]> wrote: >> >> Hi, >> >> I am trying to run FSLNets on some resting state data, and i keep getting >> the following error: >> >> nets_examples >> >> >> Cannot open >> /mnt/hgfs/Bswift/nnaor/PhD/group_analysis/RSconcat.gica/groupmelodic.ica/melodic_IC.nii.gz.sum/0108.png >> for reading >> /usr/local/fsl/bin/slices_summary: line 222: 6832 Segmentation fault >> (core dumped) $thestring >> error: imread: unable to find file /tmp/oct-SoGqfm.png >> error: called from >> imageIO at line 71 column 7 >> imread at line 106 column 30 >> nets_nodepics at line 16 column 4 >> nets_examples at line 35 column 1 >> >> How can i fix that? >> >> Thank you >> >> ######################################################################## >> >> To unsubscribe from the FSL list, click the following link: >> https://www.jiscmail.ac.uk/cgi-bin/webadmin?SUBED1=FSL&A=1 >> >> >> ----- >> Dr Janine Bijsterbosch >> Postdoctoral Researcher >> FMRIB Centre, University of Oxford >> John Radcliffe Hospital >> Oxford, United Kingdom >> [log in to unmask] >> >> >> ------------------------------ >> >> To unsubscribe from the FSL list, click the following link: >> https://www.jiscmail.ac.uk/cgi-bin/webadmin?SUBED1=FSL&A=1 >> > > ------------------------------ > > To unsubscribe from the FSL list, click the following link: > https://www.jiscmail.ac.uk/cgi-bin/webadmin?SUBED1=FSL&A=1 > > > ----- > Dr Janine Bijsterbosch > Postdoctoral Researcher > FMRIB Centre, University of Oxford > John Radcliffe Hospital > Oxford, United Kingdom > [log in to unmask] > > > ------------------------------ > > To unsubscribe from the FSL list, click the following link: > https://www.jiscmail.ac.uk/cgi-bin/webadmin?SUBED1=FSL&A=1 > ######################################################################## To unsubscribe from the FSL list, click the following link: https://www.jiscmail.ac.uk/cgi-bin/webadmin?SUBED1=FSL&A=1