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Dear all,
I have picked my helix in eman2 using e2helixboxer.py and I loaded the coordinates into RELION. But I noticed there is a shift in the helix I picked. Also, the micrographs shown in e2helixboxer.py viewer is upside-down to the images displayed in RELION. I am wondering what's going on? 
Best,
Yangqi

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