 |
 |
Dear FSL-gurus, I’m currently trying to reproduce parts of the Human Connectome Project HCP-1200 subject PTN release using the template scripts from „scripts1200“ provided by Steve Smith. I originally posted to the hcp-users mailing list and was asked to post here (https:[log in to unmask]). Unfortunately, I’m having trouble to run MELODIC v3.15 from FSL 5.0.11 on the groupPCA eigenmaps, which I downloaded from db.humanconnectome.org. The error is: Image Exception : #4 :: Incompatible number of mask positions and matrix columns I ran melodic \ -i (...)/groupPCA/HCP_S1200_812_rfMRI_MSMAll_groupPCA_d4500_Eigenmaps_recon2.dtseries.nii \ -o (...)/groupICA/groupICA_3T_HCP1200_MSMAll_d25.ica \ -d 25 --nobet --nomask --bgthreshold=-1e10 --Oall --report --CIFTI -v The complete output is below. In comparison to the original script, I added the --CIFTI switch, because otherwise melodic complained about not being able to read the groupPCA file. Any suggestions? (Are the groupPCA files from the website actually the files I want to use?) Thank you very much, Christian --- Melodic Version 3.15 Melodic results will be in (...)/groupICA/groupICA_3T_HCP1200_MSMAll_d25.ica Removing mean image ... done Normalising by voxel-wise variance ... done Data size : 4500 x 91282 Starting PCA ... done Start whitening using 25 dimensions ... retaining 17.8815 percent of the variability ... done Starting ICA estimation using symm Step no. 1 change : 0.991402 Step no. 2 change : 0.165369 Step no. 3 change : 0.0752032 Step no. 4 change : 0.0904776 Step no. 5 change : 0.0597074 Step no. 6 change : 0.0212689 Step no. 7 change : 0.0153496 Step no. 8 change : 0.012969 Step no. 9 change : 0.0073474 Step no. 10 change : 0.00580941 Step no. 11 change : 0.005415 Step no. 12 change : 0.00542758 Step no. 13 change : 0.00534145 Step no. 14 change : 0.00472263 Step no. 15 change : 0.00353801 Step no. 16 change : 0.00223848 Step no. 17 change : 0.00135433 Step no. 18 change : 0.000964336 Step no. 19 change : 0.000688032 Step no. 20 change : 0.000502852 Step no. 21 change : 0.000381007 Step no. 22 change : 0.000312506 Step no. 23 change : 0.000281786 Step no. 24 change : 0.000258009 Step no. 25 change : 0.000238241 Step no. 26 change : 0.00022084 Step no. 27 change : 0.000204907 Step no. 28 change : 0.000189965 Step no. 29 change : 0.000175774 Step no. 30 change : 0.00016223 Step no. 31 change : 0.000149303 Step no. 32 change : 0.000137001 Step no. 33 change : 0.00012535 Step no. 34 change : 0.000114379 Step no. 35 change : 0.00010411 Step no. 36 change : 9.45581e-05 Step no. 37 change : 8.57264e-05 Step no. 38 change : 7.76062e-05 Step no. 39 change : 7.01791e-05 Step no. 40 change : 6.40419e-05 Step no. 41 change : 5.91537e-05 Step no. 42 change : 5.46243e-05 Step no. 43 change : 5.0444e-05 Step no. 44 change : 4.65992e-05 Convergence after 44 steps Sorting IC maps Writing results to : (...)/groupICA/groupICA_3T_HCP1200_MSMAll_d25.ica/melodic_Tmodes (...)/groupICA/groupICA_3T_HCP1200_MSMAll_d25.ica/melodic_mix (...)/groupICA/groupICA_3T_HCP1200_MSMAll_d25.ica/melodic_FTmix (...)/groupICA/groupICA_3T_HCP1200_MSMAll_d25.ica/melodic_ICstats (...)/groupICA/groupICA_3T_HCP1200_MSMAll_d25.ica/melodic_unmix (...)/groupICA/groupICA_3T_HCP1200_MSMAll_d25.ica/mask (...)/groupICA/groupICA_3T_HCP1200_MSMAll_d25.ica/melodic_white (...)/groupICA/groupICA_3T_HCP1200_MSMAll_d25.ica/melodic_dewhite (...)/groupICA/groupICA_3T_HCP1200_MSMAll_d25.ica/melodic_FTdewhite (...)/groupICA/groupICA_3T_HCP1200_MSMAll_d25.ica/melodic_pcaE (...)/groupICA/groupICA_3T_HCP1200_MSMAll_d25.ica/melodic_pcaD ...done Creating report index page ...done Running Mixture Modelling on Z-transformed IC maps ... IC map 1 ... calculating mixture-model fit saving probability map: saving mixture model fit: (...)/groupICA/groupICA_3T_HCP1200_MSMAll_d25.ica/stats/MMstats_1 re-scaling spatial maps ... thresholding ... alternative hypothesis test at p > 0.5 saving thresholded Z-stats image: Image Exception : #4 :: Incompatible number of mask positions and matrix columns ######################################################################## To unsubscribe from the FSL list, click the following link: https://www.jiscmail.ac.uk/cgi-bin/webadmin?SUBED1=FSL&A=1