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Quoting CCP4BB automatic digest system <[log in to unmask]>: > There are 6 messages totaling 891 lines in this issue. > > Topics of the day: > > 1. Postdoctoral position in ABC transporter-mediated > polysaccharide secretion > 2. refinement papers (3) > 3. I used up all CCP4 projects ... seemingly ... (2) > > ######################################################################## > > To unsubscribe from the CCP4BB list, click the following link: > https://www.jiscmail.ac.uk/cgi-bin/webadmin?SUBED1=CCP4BB&A=1 > > ---------------------------------------------------------------------- > > Date: Mon, 25 Jun 2018 00:15:04 +0000 > From: "Zimmer, Jochen (jz3x)" <[log in to unmask]> > Subject: Postdoctoral position in ABC transporter-mediated > polysaccharide secretion > > Dear Colleagues, > > I would like to draw your attention to an open postdoctoral position > in our group. We are interested in how cells synthesize and secrete > surface polysaccharides to form cell walls and extracellular > matrices. Specifically, the successful candidate will join our > efforts to structurally and functionally characterize ABC > transporter-mediated polysaccharide secretion. The project involves > crystallographic and cryo electron microscopy techniques combined > with in vitro reconstitutions of transport processes. > > The University of Virginia provides an excellent environment for > interdisciplinary research in microbiology, infectious diseases, and > membrane biophysics. UVA maintains state-of-the-art infrastructures > for structural biology, including NMR and EPR spectroscopy, electron > microscopy, X-ray crystallography, and super-resolution microscopy. > Interested candidates are encourage to contact me directly > ([log in to unmask]). > > Sincerely, > Jochen Zimmer > > > ******************************* > > Jochen Zimmer, D. Phil. > > Associate Professor > > University of Virginia > > Molecular Physiology & Biol. Physics > > 480 Ray C. Hunt Dr. > > Snyder Bldg. #380 > > Charlottesville, VA 22908, USA > > Phone: 434 243 6506 > > ######################################################################## > > To unsubscribe from the CCP4BB list, click the following link: > https://www.jiscmail.ac.uk/cgi-bin/webadmin?SUBED1=CCP4BB&A=1 > > ------------------------------ > > Date: Mon, 25 Jun 2018 12:21:27 +0000 > From: Careina Edgooms <[log in to unmask]> > Subject: refinement papers > > Hello everyone > I am giving talk about refinement and model building. I wonder if > anyone knows of latest relevant papers on this topic that you could > suggest for me?thank you > Careina > > ######################################################################## > > To unsubscribe from the CCP4BB list, click the following link: > > ------------------------------ > > Date: Mon, 25 Jun 2018 16:57:35 +0200 > From: Misba Ahmad <[log in to unmask]> > Subject: Re: refinement papers > > Here are some nice papers: > > journals.iucr.org/d/issues/2012/04/00/ > > > Best > Misbha > > > On Mon, 25 Jun 2018 at 14:26, Careina Edgooms < > [log in to unmask]> wrote: > >> Hello everyone >> >> I am giving talk about refinement and model building. I wonder if anyone >> knows of latest relevant papers on this topic that you could suggest for me? >> thank you >> >> Careina >> >> ------------------------------ >> >> To unsubscribe from the CCP4BB list, click the following link: >> https://www.jiscmail.ac.uk/cgi-bin/webadmin?SUBED1=CCP4BB&A=1 >> > > ######################################################################## > > To unsubscribe from the CCP4BB list, click the following link: > https://www.jiscmail.ac.uk/cgi-bin/webadmin?SUBED1=CCP4BB&A=1 > > ------------------------------ > > Date: Mon, 25 Jun 2018 17:25:54 +0000 > From: Antonio Ariza <[log in to unmask]> > Subject: I used up all CCP4 projects ... seemingly ... > > Hi all and sorry ... (I thought it best to apologise pre-emptively > for this rather long question). > > > Ok ... so, I know I should have changed over to CCP4i2 a LOOOONG > time ago, but a student in my lab had trouble transferring his > projects from CCP4i to CCP4i2, so I decided to postpone it ... and I > kept postponing it ever since. I have now run into a problem with > the old CCP4i gui, which means I might have to change over to CCP4i2. > > > It seems I have run out of projects! > > > Over the last 4 years I have created 251 projects. After I created > the last one and worked on it for a while, I went and revisited an > older project. Now I can't access the last project I created from > the gui anymore. > > > The last project I created would, alphabetically speaking, also be > the last project in the list that appears when you press the "Change > Project" button at the top of the gui. However, the list that > appears seems to only have enough spaces for 250 project names, > which means it shows the first 250 projects (alphabetically) and the > last project isn't on it. When I press the "Directories&PojectDir" > button I can see I did indeed create the project that I'm looking > for and when I check the computer, all the files for this project > are in their corresponding directory. > > > I guess, if I were to create a 252nd project with a title that would > fall towards the beginning of the alphabetical project list, the gui > would let me do that, but I would then lose what is currently the > last project I can see on the list, which means I would have 2 > projects I can't access via the gui. > > > If I start using CCP4i2 and copy all my old projects across, will it > have the same problem? Has anybody else with a large number of > projects run into this problem? > > > Should I re-create only the 251st project and set up all new > projects in CCP4i2 and keep the old projects for use in CCP4i instead? > > > Cheers, > > > Tony > > > ------------------------------------------------------ > > Dr. Antonio Ariza > University of Oxford > Sir William Dunn School of Pathology > South Parks Road > Oxford > OX1 3RE > e-mail: [log in to unmask]<mailto:[log in to unmask]> > Tel: 00 +44 1865 285655 > > Links to my public profiles: > ResearchGate<https://www.researchgate.net/profile/Antonio_Ariza> > LinkedIn<https://www.linkedin.com/in/antonioariza1> > GoogleScholar<https://scholar.google.co.uk/citations?user=9pAIKV0AAAAJ&hl=en> > Twitter<https://twitter.com/DrAntonioAriza?lang=en> > > Check out my latest paper!!! > Structural insights into the function of ZRANB3 in replication > stress response<http://www.nature.com/articles/ncomms15847> > > ######################################################################## > > To unsubscribe from the CCP4BB list, click the following link: > https://www.jiscmail.ac.uk/cgi-bin/webadmin?SUBED1=CCP4BB&A=1 > > ------------------------------ > > Date: Mon, 25 Jun 2018 18:53:46 +0100 > From: Jon Agirre <[log in to unmask]> > Subject: Re: I used up all CCP4 projects ... seemingly ... > > I would transfer the new project to i2, and keep the ‘legacy’ stuff in i1. > You can access i1 stuff from i2 with the i1 viewer. > > Let us know if you need any help with the transition. Happy to receive > feedback and suggestions! > > Jon > On Mon, 25 Jun 2018 at 18:27, Antonio Ariza <[log in to unmask]> > wrote: > >> Hi all and sorry ... (I thought it best to apologise pre-emptively for >> this rather long question). >> >> >> Ok ... so, I know I should have changed over to CCP4i2 a LOOOONG time ago, >> but a student in my lab had trouble transferring his projects from CCP4i to >> CCP4i2, so I decided to postpone it ... and I kept postponing it ever >> since. I have now run into a problem with the old CCP4i gui, which means I >> might have to change over to CCP4i2. >> >> >> It seems I have run out of projects! >> >> >> Over the last 4 years I have created 251 projects. After I created the >> last one and worked on it for a while, I went and revisited an older >> project. Now I can't access the last project I created from the gui anymore. >> >> >> The last project I created would, alphabetically speaking, also be the >> last project in the list that appears when you press the "Change Project" >> button at the top of the gui. However, the list that appears seems to only >> have enough spaces for 250 project names, which means it shows the first >> 250 projects (alphabetically) and the last project isn't on it. When I >> press the "Directories&PojectDir" button I can see I did indeed create the >> project that I'm looking for and when I check the computer, all the files >> for this project are in their corresponding directory. >> >> >> I guess, if I were to create a 252nd project with a title that would fall >> towards the beginning of the alphabetical project list, the gui would let >> me do that, but I would then lose what is currently the last project I can >> see on the list, which means I would have 2 projects I can't access via the >> gui. >> >> >> If I start using CCP4i2 and copy all my old projects across, will it have >> the same problem? Has anybody else with a large number of projects run into >> this problem? >> >> >> Should I re-create only the 251st project and set up all new projects in >> CCP4i2 and keep the old projects for use in CCP4i instead? >> >> >> Cheers, >> >> >> Tony >> >> >> ------------------------------------------------------ >> >> >> >> >> >> >> * Dr. Antonio Ariza University of Oxford Sir William Dunn School of >> Pathology South Parks Road Oxford OX1 3RE* >> *e-mail: *[log in to unmask] >> *Tel: 00 +44 1865 285655* >> >> *Links to my public profiles:* >> ResearchGate <https://www.researchgate.net/profile/Antonio_Ariza> >> LinkedIn <https://www.linkedin.com/in/antonioariza1> >> GoogleScholar >> <https://scholar.google.co.uk/citations?user=9pAIKV0AAAAJ&hl=en> >> Twitter <https://twitter.com/DrAntonioAriza?lang=en> >> >> *Check out my latest paper!!!* >> Structural insights into the function of ZRANB3 in replication stress >> response <http://www.nature.com/articles/ncomms15847> >> >> ------------------------------ >> >> To unsubscribe from the CCP4BB list, click the following link: >> https://www.jiscmail.ac.uk/cgi-bin/webadmin?SUBED1=CCP4BB&A=1 >> > -- > Dr Jon Agirre > Royal Society University Research Fellow > York Structural Biology Laboratory / Department of Chemistry > University of York, Heslington, YO10 5DD, York, UK > http://www.york.ac.uk/chemistry/research/ysbl/people/staff/jagirre/ > Office: /B/K/065 Phone: +44 (0) 1904 32 8252 > Twitter: @alwaysonthejazz > > ######################################################################## > > To unsubscribe from the CCP4BB list, click the following link: > https://www.jiscmail.ac.uk/cgi-bin/webadmin?SUBED1=CCP4BB&A=1 > > ------------------------------ > > Date: Mon, 25 Jun 2018 11:59:11 -0700 > From: Oleg Sobolev <[log in to unmask]> > Subject: Re: refinement papers > > Hi Careina, > > On behalf of Pavel Afonine: > > This (and references inside) may be a start: > > http://scripts.iucr.org/cgi-bin/paper?S0907444912001308 > > Then may be you could reuse some of existing presentations from here > > https://www.phenix-online.org/presentations/ > > Best regards, > Oleg Sobolev. > > On Mon, Jun 25, 2018 at 5:21 AM, Careina Edgooms < > [log in to unmask]> wrote: > >> Hello everyone >> >> I am giving talk about refinement and model building. I wonder if anyone >> knows of latest relevant papers on this topic that you could suggest for me? >> thank you >> >> Careina >> >> ------------------------------ >> >> To unsubscribe from the CCP4BB list, click the following link: >> https://www.jiscmail.ac.uk/cgi-bin/webadmin?SUBED1=CCP4BB&A=1 >> > > ######################################################################## > > To unsubscribe from the CCP4BB list, click the following link: > https://www.jiscmail.ac.uk/cgi-bin/webadmin?SUBED1=CCP4BB&A=1 > > ------------------------------ > > End of CCP4BB Digest - 24 Jun 2018 to 25 Jun 2018 (#2018-154) > ************************************************************* Mateo Seoane Blanco PhD student Dept. of Macromolecular Structures - Lab 20.B Centro Nacional de Biotecnología - CSIC C/ Darwin 3, Madrid 28049, Spain Tel.: (+34) 91 585 4517 ######################################################################## To unsubscribe from the CCP4BB list, click the following link: https://www.jiscmail.ac.uk/cgi-bin/webadmin?SUBED1=CCP4BB&A=1