It's similar, but not exactly the same.  The error I got was closer to the one shown in https://www.jiscmail.ac.uk/cgi-bin/webadmin?A2=fsl;38d3e56.1510

The problem was with my bvecs/bvals file.  If I remember correctly I had nan's in my bvecs that were a result of normalizing the vectors for eddy; although, if you only have one shell this probably doesn't apply to you.

It may be worth double checking your bvecs/bval files?

Forrest

On Tue, May 29, 2018 at 9:14 PM, Sabina Rautu <[log in to unmask]> wrote:
Hi Forrest,

Thank you for the reply!
The output I get is:

Reading images
Performing volume-to-volume registration
Running Register
Loading prediction maker
Evaluating prediction maker model
I'm thrown
terminate called after throwing an instance of 'EDDY::KMatrixException'
  what(): 
Aborted (core dumped)

Is it similar to what you had?

Best,
Sabina