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Hi Anderson, Thanks a lot for your advice. I will read carefully and if there was any problem I will let you know. Best wishes, Rosalia El vie., 25 may. 2018 7:03, Anderson M. Winkler <[log in to unmask]> escribió: > Hi Rosalia, > > The easiest way is probably to run mris_preproc, then feed the .mgz files > thus generated directly into PALM, with design matrix and contrasts as you > are already familiar with. > > Also note that FreeSurfer now has a wrapper for PALM: > http://freesurfer.net/fswiki/FsPalm > > All the best, > > Anderson > > > On 18 May 2018 at 15:35, Rosalia Dacosta Aguayo <[log in to unmask]> > wrote: > >> >> ---------- Forwarded message ---------- >> From: Rosalia Dacosta Aguayo <[log in to unmask]> >> Date: 2018-05-18 2:53 GMT+02:00 >> Subject: Running statistics in FSL with Free Surfer outpouts >> To: FSL - FMRIB's Software Library <[log in to unmask]> >> >> >> Dear FSL experts, >> >> I hope this is not a naive question and I can get some help from you. >> I have run pre-processing with Free Surfer, but now that I have to run >> the statistics, I would prefer to use your GLM as I have more experience >> with your software. The problem is that I do not know which of the outputs >> from Free Surfer (cortical thickness) I would have to use to run the >> statical comparisons. >> I would greatly appreciate if you could guide me on this. >> Best regards, >> Rosie >> >> >> >> -- >> Rosalia Dacosta-Aguayo, PhD. >> Rutgers University, Department of Physical Medicine and Rehabilitation. >> *Research Assistant Professor* >> *Post Doctoral Fellow* - Neuropsychology and Neuroscience / NNL Lab >> Kessler Foundation >> 120 Eagle Rock Avenue, Suite 100 >> <https://maps.google.com/?q=120+Eagle+Rock+Avenue,+Suite+100+East+Hanover,+NJ%C2%A007936&entry=gmail&source=g> >> East Hanover, NJ 07936 >> <https://maps.google.com/?q=120+Eagle+Rock+Avenue,+Suite+100+East+Hanover,+NJ%C2%A007936&entry=gmail&source=g> >> -3147 >> T. 973.323.3680 | F. 973.386.1361 >> [log in to unmask] >> > >