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Hello, Can you try running: $FSLDIR/fslpython/bin/conda env create -f $FSLDIR/etc/fslconf/fslpython_environment.yml and check if imglob etc are created in $FSLDIR/bin? Kind Regards Matthew -------------------------------- Dr Matthew Webster FMRIB Centre John Radcliffe Hospital University of Oxford > On 27 Apr 2018, at 16:03, Wang Lei <[log in to unmask]> wrote: > > Dear Matthew, > > $FSLDIR/bin/fslpython/env is an empty directory. > > > > > > > sungoku2005 > 邮箱：[log in to unmask] > <https://maas.mail.163.com/dashi-web-extend/html/proSignature.html?iconUrl=http://nos.netease.com/mail-online/sm8c960285ff16e19f8a58f45587734068.jpg&name=sungoku2005&uid=sungoku2005%40gmail.com&ftlId=3&items=%5B%22%E9%82%AE%E7%AE%B1%EF%BC%9Asungoku2005%40gmail.com%22%5D> > 签名由 网易邮箱大师 <https://mail.163.com/dashi/dlpro.html?from=mail88> 定制 > > > 在2018年04月27日 22:49，Matthew Webster <mailto:[log in to unmask]> 写道： > Hello, > Can you let me know what is in the envs subdirectory? > > Kind Regards > Matthew > -------------------------------- > Dr Matthew Webster > FMRIB Centre > John Radcliffe Hospital > University of Oxford > >> On 27 Apr 2018, at 14:57, Wang Lei <[log in to unmask] <mailto:[log in to unmask]>> wrote: >> >> Dear expert, >> >> Yes, I have the fslpython directory under $FSLDIR. >> >> There are several sub-directories under fslpython: >> >> bin, compiler_compact, conda-meta, envs, etc, include, lib, pkgs, share, ssl, x86_64-conda_cos6-linux-gnu >> >> and a file, LICENSE.txt >> >> What should I do next ? >> >> 2018-04-27 18:10 GMT+08:00 Matthew Webster <[log in to unmask] <mailto:[log in to unmask]>>: >> Hello, >> Do you have a directory called fslpython in $FSLDIR? >> >> Kind Regards >> Matthew >> -------------------------------- >> Dr Matthew Webster >> FMRIB Centre >> John Radcliffe Hospital >> University of Oxford >> >> > On 27 Apr 2018, at 10:27, Sungoku <[log in to unmask] <mailto:[log in to unmask]>> wrote: >> > >> > Dear Experts: >> > I installed FSL 5.0.11 under Ubuntu16.04 just now，using fslinstaller.py. >> > Everything reported success, no errors. >> > I tested a few commands and gui, works fine too. >> > BUT, when I using fslvbm commands, error message showed: /usr/local/fsl/bin/imglob not found >> > I checked my $FSLDIR/bin directory, and did not find the imglob file . >> > Actually, I compared this bin/ directory between 5.0.11 and 5.0.10, and found three files missing : >> > >> > imglob, imcp, immv >> > >> > Are these files deleted in new version now?? But fslvbm and TBSS need imglob to run. >> > Where can I get these missing files? >> >