Print

Print

Dear Mathew,

Please see the report that you requested and give your suggestions. 

(I am posting this message again after changing the subject title. Previously it was “ rejected posting...”).

Thanks
RB

$ $FSLDIR/etc/fslconf/fslmachtype.sh
gnu_64-gcc4.8

$ ls $FSLDIR/config/$FSLMACHTYPE
apple-darwin10-gcc4.2   common                          linux_32-gcc4.1
apple-darwin11-gcc4.2   default.mk                       linux_64-gcc3.4
apple-darwin12-gcc4.2   generic                           linux_64-gcc4.0
apple-darwin12-llvm4.0  gnu_64-gcc4.4               linux_64-gcc4.1
apple-darwin12-llvm5.0  i686-pc-cygwin-gcc3.2   linux_64-gcc4.2
apple-darwin13-llvm5.0  i686-pc-cygwin-gcc3.3   linux_64-gcc4.4
apple-darwin13-llvm5.1  i686-pc-cygwin-gcc3.4   linux_64-gcc4.8
apple-darwin13-llvm6.0  linux_32-gcc2.96           Makefile
apple-darwin7-gcc3.1    linux_32-gcc3.2              sparc-solaris2.8-gcc2.95
apple-darwin7-gcc3.3    linux_32-gcc3.3              sparc-solaris2.9-gcc2.95
apple-darwin8-gcc4.0    linux_32-gcc3.4
apple-darwin9-gcc4.0    linux_32-gcc4.0

$ dpkg -l | grep gcc
ii  gcc                                        4:7.2.0-1ubuntu1                          amd64        GNU C compiler
ii  gcc-4.8                                  4.8.5-4ubuntu6                             amd64        GNU C compiler
ii  gcc-4.8-base:amd64             4.8.5-4ubuntu6                             amd64        GCC, the GNU Compiler Collection (base package)
ii  gcc-7                                     7.2.0-8ubuntu3.2                          amd64        GNU C compiler
ii  gcc-7-base:amd64                7.2.0-8ubuntu3.2                          amd64        GCC, the GNU Compiler Collection (base package)
ii  gcc-7-base:i386                    7.2.0-8ubuntu3.2                          i386         GCC, the GNU Compiler Collection (base package)
ii  lib32gcc1                              1:7.2.0-8ubuntu3.2                        amd64        GCC support library (32 bit Version)
ii  libcaca0:amd64                    0.99.beta19-2build2~gcc5.2          amd64        colour ASCII art library
ii  libgcc-4.8-dev:amd64           4.8.5-4ubuntu6                              amd64        GCC support library (development files)
ii  libgcc-7-dev:amd64              7.2.0-8ubuntu3.2                           amd64        GCC support library (development files)
ii  libgcc1:amd64                      1:7.2.0-8ubuntu3.2                        amd64        GCC support library
ii  libgcc1:i386                          1:7.2.0-8ubuntu3.2                        i386         GCC support library


On Wed, Apr 18, 2018 at 5:56 PM, Matthew Webster <[log in to unmask]> wrote:
Hello Ramesh,
                        can you confirm what is reported by $FSLDIR/etc/fslconf/fslmachtype.sh and if there is a matching folder in $FSLDIR/config?

Kind Regards
Matthew
--------------------------------
Dr Matthew Webster
FMRIB Centre
John Radcliffe Hospital
University of Oxford

> On 18 Apr 2018, at 08:57, Ramesh Babu <[log in to unmask]> wrote:
>
> Dear Matthew,
>
> Thank you for your response. I am using different gcc compilers. I made gcc-4.8 as defult compiler, still I am receiving error and fsl package is not build. Please give your suggestions.
>
> Thanks
> RB
>
>
> $ gcc --version
> gcc (Ubuntu 4.8.5-4ubuntu6) 4.8.5
>
>
> Last para of the error report:
>
> !!ERROR in BUILD!!
>   Could not make the following projects successfully:
>    extras  CiftiLib-master utils niftiio fslio giftiio miscmaths newimage libvis first_lib meshclass fslvtkio basisfield warpfns bint shapeModel MVdisc fslsurface libmeshutils newmesh DiscreteOpt FastPDlib MSMRegLib misc_c avwutils bet2 cluster fast4 feat5 film filmbabe flirt fabber mcflirt melodic miscvis mm gps randomise siena slicetimer susan tbss fnirt fugue asl_mfree fdt first possum flameo oxford_asl qboot topup ptx2 lesions MSM
>
> On Tue, Apr 17, 2018 at 7:36 PM, Matthew Webster <[log in to unmask]> wrote:
> Hello Ramesh,
>                       We don’t have a specific config folder for your system, but if in
>
> $FSLDIR/config
>
> you run
>
> cp -r linux_64_gcc4.4 $FSLMACHTYPE
>
> ( assuming FSLMACHTYPE is already set on your system )
>
> then that should be a good first guess for the settings for your system,
>
> Kind Regards
> Matthew
> --------------------------------
> Dr Matthew Webster
> FMRIB Centre
> John Radcliffe Hospital
> University of Oxford
>
>> On 17 Apr 2018, at 14:46, Ramesh Babu <[log in to unmask]> wrote:
>>
>>
>> Dear Experts
>>
>> I am getting the error while building fsl from the source. Please see the build.log link below and give your suggesions.
>>
>> https://drive.google.com/open?id=0B4LRMnQEsCDoZER2MVVWeWZHNDlac3ZBaE5ITUZXc2VMTHBr
>>
>>
>> I am using Ubuntu OS 17.10
>>
>> Thanks
>> RB
>>
>>
>
>