On 27 Mar 2018, at 00:24, ARJUN MUKERJI <[log in to unmask]> wrote:

Hi FSLers,

There appears to be a mismatch between the test suite in FEEDS 5.0.11 and the FSL software. Specifically, after upgrading from 5.0.10 using the fslinstaller.py script, I attempted to run the FEEDS tests and had them fail (output below). The cause seems to be that the imcp utility does not exist in the FSL directory.

---

prism:feeds smerdis$ ./RUN all

FSL Evaluation and Example Data Suite v5.0.11

start time = Mon Mar 26 16:18:56 PDT 2018

hostname = prism

os = Darwin prism 17.4.0 Darwin Kernel Version 17.4.0: Sun Dec 17 09:19:54 PST 2017; root:xnu-4570.41.2~1/RELEASE_X86_64 x86_64

/bin/rm -rf /Users/smerdis/Downloads/feeds/results ; mkdir /Users/smerdis/Downloads/feeds/results

Starting PRELUDE & FUGUE at Mon Mar 26 16:18:56 PDT 2018

% error = 0.0

% error = 0.0

Starting SUSAN at Mon Mar 26 16:18:56 PDT 2018

% error = 0.03

Starting SIENAX (including testing BET and FLIRT and FAST) at Mon Mar 26 16:19:41 PDT 2018

child process exited abnormally

    while executing

"fsl:exec "${FSLDIR}/bin/imcp $FEEDSDIR/data/structural $FEEDSDIR/results/structural""

    invoked from within

"if { $feeds(sienax) } {

puts "\nStarting SIENAX (including testing BET and FLIRT and FAST) at [ exec date ]"

fsl:exec "${FSLDIR}/bin/imcp $FEEDSDIR/..."

    (file "./RUN" line 233)

prism:feeds smerdis$ ${FSLDIR}/bin/imcp

-bash: /usr/local/fsl/bin/imcp: No such file or directory

--

Arjun Mukerji

PhD Candidate, Silver Lab

Helen Wills Neuroscience Institute

University of California, Berkeley