Thanks, Paul so much, really appreciate your fast reply!
I returned one step back and avoided the use of NoMachine (i.e, I hooked a
screen to the Linux machine directly). I got a different error when I run
Fsleyes:
[meena@ghine ~]$ WARNING __init__.py 596: create -
GLContext callback function raised NullFunctionError: Attempt to call an
undefined function glutInit, check for bool(glutInit) before calling
Traceback (most recent call last):
File "fsleyes/gl/__init__.py", line 590, in create
File "fsleyes/main.py", line 371, in realCallback
File "fsleyes/gl/__init__.py", line 377, in bootstrap
File "site-packages/OpenGL/GLUT/special.py", line 333, in glutInit
File "site-packages/OpenGL/platform/baseplatform.py", line 407, in
__call__
NullFunctionError: Attempt to call an undefined function glutInit, check
for bool(glutInit) before calling
As the Fsleyes troubleshooting page suggested, I need to install *glutInit*.
I followed the recommended link (http://freeglut.sourceforge.
net/docs/install.php) and I followed the steps:
1- zcat freeglut-2.2.0.tar.bz2 | tar -vxf -
2- cd freeglut-2.X.X
3- LDFLAGS=-Wl,-R/usr/X11R6/lib ./configure
4- make all
5- make install
Steps (1-3) was done without errors. However, in step 4 (make all), it gave
me this error:
make all-recursive
make[1]: Entering directory `/home/meena/freeglut-2.8.0'
Making all in src
make[2]: Entering directory `/home/meena/freeglut-2.8.0/src'
/bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I..
-I../include -g -O2 -Wall -pedantic -MT libglut_la-freeglut_callbacks.lo
-MD -MP -MF .deps/libglut_la-freeglut_callbacks.Tpo -c -o
libglut_la-freeglut_callbacks.lo `test -f 'freeglut_callbacks.c' || echo
'./'`freeglut_callbacks.c
libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -I../include -g -O2 -Wall
-pedantic -MT libglut_la-freeglut_callbacks.lo -MD -MP -MF
.deps/libglut_la-freeglut_callbacks.Tpo -c freeglut_callbacks.c -fPIC
-DPIC -o .libs/libglut_la-freeglut_callbacks.o
In file included from ../include/GL/freeglut.h:17,
from freeglut_callbacks.c:28:
../include/GL/freeglut_std.h:123:20: error: GL/glu.h: No such file or
directory
In file included from freeglut_callbacks.c:29:
freeglut_internal.h:112:39: error: X11/extensions/XInput.h: No such file or
directory
make[2]: *** [libglut_la-freeglut_callbacks.lo] Error 1
make[2]: Leaving directory `/home/meena/freeglut-2.8.0/src'
make[1]: *** [all-recursive] Error 1
make[1]: Leaving directory `/home/meena/freeglut-2.8.0'
make: *** [all] Error 2
I did these steps as a superuser as recommended and I tried different
versions of the glutInit and all gave the same error message.
Unfortunately, I did not find any help online. Any direction I can try?
Thanks again Paul;
--Meena
On Sat, Mar 24, 2018 at 6:29 AM, paul mccarthy <[log in to unmask]>
wrote:
> Hi Meena,
>
> You could try running FSLeyes with the LIBGL_ALWAYS_SOFTWARE environment
> variable, e.g.:
>
> LIBGL_ALWAYS_SOFTWARE=1 fsleyes
>
> If FSLeyes works in this way, and is fast enough, then you can use this as
> a solution.
>
> Alternately, one person has reported success in getting around this
> problem by following the steps described here:
>
> https://wiki.x2go.org/doku.php/wiki:development:glx-xlib-workaround
>
> I have translated the Ubuntu 14.04 instructions to their CentOS 6.9
> equivalents here:
>
> https://git.fmrib.ox.ac.uk/snippets/9
>
> Let me know how you get on.
>
> Cheers,
>
> Paul
>
> On 23 March 2018 at 21:09, Meena M. Makary <[log in to unmask]>
> wrote:
>
>> Dear FSL experts;
>>
>> I am trying to run FSLeyes from "NoMachine” on Centos 6.9 and it gives me
>> the following error:
>>
>> WARNING __init__.py 596: create - GLContext callback
>> function raised RuntimeError: OpenGL 1.4 or newer is required (detected
>> version: 1.2
>> Traceback (most recent call last):
>> File "fsleyes/gl/__init__.py", line 590, in create
>> File "fsleyes/main.py", line 371, in realCallback
>> File "fsleyes/gl/__init__.py", line 315, in bootstrap
>> RuntimeError: OpenGL 1.4 or newer is required (detected version: 1.2
>>
>> I tried “unset LIBGL_ALWAYS_INDIRECT “, as recommended on the
>> troubleshooting page (https://users.fmrib.ox.ac.uk/
>> ~paulmc/fsleyes/userdoc/latest/troubleshooting.html), and still gives me
>> the same error.
>>
>> Any help would be much appreciated!
>>
>> Thanks,
>>
>> --
>> *Meena M. Makary, Ph.D.*
>> Assistant Professor | Cairo University <http://bmes.cufe.edu.eg/>
>> Postdoctoral Fellow | Yale University School of Medicine
>> <http://people.yale.edu/search/meena_beshara.profile>
>> Postdoctoral Associate | The John B. Pierce Laboratory
>> <http://jbpierce.org/postdoctoral-associates/>
>> Treasurer | OHBM Student and Postdoc SIG
>> <https://www.humanbrainmapping.org/i4a/pages/index.cfm?pageid=3449>
>>
>> 290 Congress Avenue, New Haven, CT 06519
>> <https://maps.google.com/?q=290+Congress+Avenue,+New+Haven,+CT+06519&entry=gmail&source=g>
>> +1 (475) 731-5592 <+1%20475-731-5592>
>>
>
>
--
*Meena M. Makary, Ph.D.*
Assistant Professor | Cairo University <http://bmes.cufe.edu.eg/>
Postdoctoral Fellow | Yale University School of Medicine
<http://people.yale.edu/search/meena_beshara.profile>
Postdoctoral Associate | The John B. Pierce Laboratory
<http://jbpierce.org/postdoctoral-associates/>
Executive Committee Member | OHBM Student and Postdoc SIG
<https://www.humanbrainmapping.org/i4a/pages/index.cfm?pageid=3449>
290 Congress Avenue, New Haven, CT 06519
+1 (475) 731-5592 <+1%20475-731-5592>
