Dear Sayli
Here are some options from Table 10.1 of this book chapter
https://link.springer.com/
chapter/10.1007/978-94-024- 1069-3_10
cons-PPISP
Uses sequence profiles and solvent accessibility for residues and their neighbours
Zhou and Shan (2001)
meta-PPISP
Metaserver using cons-PPISP, PINUP and Promate predictions
Qin and Zhou (2007)
CPORT
Consensus prediction from six different methods
de Vries and Bonvin (2011)
PRISE
Atomic composition, residue type and solvent exposure of a central surface residue plus its neighbours
Jordan et al. (2012)
VORFFIP
Considers a variety of structural, energetic, evolutionary and crystallographic parameters
Segura et al. (2011)
i
I don't know if they are all still functional: unhappily there tends to be quite a high turnover of such servers
Best wishes
Daniel
On 02/03/18 07:47, Sayli Dalal wrote:
Dear all,
Can anyone help me with a web server or method for prediction of interfaces for protein-protein interaction?
Thanks and best regards,
Sayli Dalal
Post-Doctoral Fellow
Dept. of Biophysics
NIMHANS
-- Dr Daniel John Rigden Tel:(+44) 151 795 4467 Institute of Integrative Biology FAX:(+44) 151 795 4406 Room 101, Biosciences Building University of Liverpool http://pcwww.liverpool.ac.uk/~drigden/ Crown St., Liverpool L69 7ZB, U.K.
Dr. Dipak N. Patil
Department of Neuroscience
The Scripps Research Institute
130 Scripps Way, 3C2
Jupiter, Florida 33458