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Richard Brown <[log in to unmask]>: Feb 09 09:47AM @casperdcl ditto re removal of `brew tap homebrew/science` - if Travis is happy, I'm happy.   -- You are receiving this because you are subscribed to this thread. Reply to this email directly or ...more

Kris Thielemans <[log in to unmask]>: Feb 10 12:10AM KrisThielemans commented on this pull request.       > COPY user_sirf-ubuntu.sh . RUN EXTRA_BUILD_FLAGS="-DCMAKE_BUILD_TYPE=Release -DUSE_SYSTEM_Boost=ON \ - -DUSE_SYSTEM_SWIG=ON ...more

evgueni-ovtchinnikov <[log in to unmask]>: Feb 09 04:05PM Closed #103.   -- You are receiving this because you are subscribed to this thread. Reply to this email directly or view it on GitHub: https://github.com/CCPPETMR/SIRF/issues/103#event-1466961401 ...more

Kris Thielemans <[log in to unmask]>: Feb 09 11:52PM Reopened #103.   -- You are receiving this because you are subscribed to this thread. Reply to this email directly or view it on GitHub: ...more

Kris Thielemans <[log in to unmask]>: Feb 10 12:07AM I still have the same problem (with SIRF/devel and STIR/master)   -- You are receiving this because you are subscribed to this thread. Reply to this email directly or view it on GitHub: ...more

Edoardo Pasca <[log in to unmask]>: Feb 09 04:42PM with https://github.com/CCPPETMR/SIRF-SuperBuild/commit/f255b459fafab9d304df225c77db2a68c75b5855 I have set the build directories as ...more

Kris Thielemans <[log in to unmask]>: Feb 09 03:46PM -0800 You should check `petmr_data_path('pet')` in Python. That should be set to `/blabla/SIRF/data/examples/PET` (which is set via the env variable `SIRF_PATH`, which should be set to the location of the ...more

Kris Thielemans <[log in to unmask]>: Feb 09 03:51PM -0800 I've seen somewhere in the doc a reference to where the examples are etc, but I cannot find it anymore. In any case, this should be somehwere rather promiment. It's going to change with this PR, so ...more

Kris Thielemans <[log in to unmask]>: Feb 09 11:22PM not sure where it is now. Should be in instructions for VM I guess. Also in instructions for Windows on Wiki   -- You are receiving this because you are subscribed to this thread. ...more

Kris Thielemans <[log in to unmask]>: Feb 09 11:19PM @KrisThielemans pushed 1 commit.   5c852bf Update ReleaseChecklist.md     -- You are receiving this because you are subscribed to this thread. View it on GitHub: ...more

Kris Thielemans <[log in to unmask]>: Feb 09 11:08PM I don't think [UPDATE.sh](scripts/UPDATE.sh) currently will update the stored version in an existing VM. It's not clear if this is desired or not (arguably, the VM is the old, but after it's updated, ...more

evgueni-ovtchinnikov <[log in to unmask]>: Feb 09 04:21PM Chained normalisation misbehaves now (strange output from e.g. asm_sinograms.py, crashes).   Could it be because of OpenMP?   I switched off OpenMP option for STIR in CMake and deleted /openmp ...more

Kris Thielemans <[log in to unmask]>: Feb 09 05:06PM yes, known bug in OPENMP version on STIR/master. The OPENMP branch should fix that...   Once you've configured CMake, it's kind of hard to change compiler flags. I'd recommend throwing your build ...more

evgueni-ovtchinnikov <[log in to unmask]>: Feb 09 04:09PM no longer an issue now that we are using AcquisitionSensitivityModel instead of normalisation   -- You are receiving this because you are subscribed to this thread. Reply to this email directly or ...more

evgueni-ovtchinnikov <[log in to unmask]>: Feb 09 04:09PM Closed #98.   -- You are receiving this because you are subscribed to this thread. Reply to this email directly or view it on GitHub: https://github.com/CCPPETMR/SIRF/issues/98#event-1466968364 ...more

evgueni-ovtchinnikov <[log in to unmask]>: Feb 09 08:07AM -0800 Closed #101.   -- You are receiving this because you are subscribed to this thread. Reply to this email directly or view it on GitHub: https://github.com/CCPPETMR/SIRF/issues/101#event-1466964779 ...more

evgueni-ovtchinnikov <[log in to unmask]>: Feb 09 04:07PM reconstruction from listmode demo with attenuation, ecat8 normalisation and randoms added   -- You are receiving this because you are subscribed to this thread. Reply to this email directly or ...more

evgueni-ovtchinnikov <[log in to unmask]>: Feb 09 04:06PM Closed #102.   -- You are receiving this because you are subscribed to this thread. Reply to this email directly or view it on GitHub: https://github.com/CCPPETMR/SIRF/issues/102#event-1466962353 ...more

Edoardo Pasca <[log in to unmask]>: Feb 09 01:34AM -0800 I am reporting a strange error it has happened to me a couple of times.   1. I successfully create the VM, with everything working, including X. 2. I work on the VM for a while. After a few reboots ...more

Edoardo Pasca <[log in to unmask]>: Feb 09 01:34AM -0800 Currently I'm trying to install the VGA, but not really successfully.   -- You are receiving this because you are subscribed to this thread. Reply to this email directly or view it on GitHub: ...more

Kris Thielemans <[log in to unmask]>: Feb 09 09:38AM did you install https://github.com/dotless-de/vagrant-vbguest   -- You are receiving this because you are subscribed to this thread. Reply to this email directly or view it on GitHub: ...more

Edoardo Pasca <[log in to unmask]>: Feb 09 02:01AM -0800 Yes I did, but that didn't fix the problem.   Anyhow, I've now installed the VGA from http://download.virtualbox.org/virtualbox/5.1.18/ mounting manually a iso file from a shared folder (not really ...more

Edoardo Pasca <[log in to unmask]>: Feb 09 10:04AM I'll give the vbguest a thorough read because it should help automating this fix.   -- You are receiving this because you are subscribed to this thread. Reply to this email directly or view it on ...more

Casper da Costa-Luis <[log in to unmask]>: Feb 09 02:42AM -0800 Don't know about vbox, but in docker (xenial64 on xenial64) I needed to mount the host's `/tmp/.X11-unix` and `/tmp/.docker.xauth` within the container. Certainly looks like a vbox, rather than xenial ...more

Edoardo Pasca <[log in to unmask]>: Feb 09 11:24AM Closed #49.   -- You are receiving this because you are subscribed to this thread. Reply to this email directly or view it on GitHub: ...more

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