save results
finished
size of old seed mask is
1755 18687.242188
size of new seed mask is
1627 17324.298828
run 2nd bip round
seed is /Exps/Data/BIP_ROTMAN/YC/derivatives/sub-5167/dwi/unc_r_bip/roi_B_1
target is /Exps/Data/BIP_ROTMAN/YC/derivatives/sub-5167/dwi/unc_r_bip/roi_A_2
/Exps/Data/BIP_ROTMAN/YC/sub-5167
BipSub thinks bedpost dir is /Exps/Data/BIP_ROTMAN/YC/derivatives/sub-5167/dwi/Bed.bedpostX
Log directory is: /Exps/Data/BIP_ROTMAN/YC/derivatives/sub-5167/dwi/unc_r_bip
Running in seedmask mode
load seeds
done.
Load bedpostx samples
1_1
1_2
1_3
2_1
2_2
2_3
3_1
3_2
3_3
nfibres : 3
nsamples : 50
Done loading samples.
Volume seeds
volume 1
time spent tracking: 1242 seconds
save results
/usr/local/bip/bip.sh: line 55: 2385 Segmentation fault: 11 probtrackx2 -x ${seed} -l -c 0.2 -S 2000 --steplength=0.5 -P 5000 --stop=${inv} --forcedir --opd -s ${BEDPOST}/merged -m ${BEDPOST}/nodif_brain_mask --dir=${tract_dir} --targetmasks=${tract_dir}/targets.txt --os2t
size of old seed mask is
1647 17537.259766
size of new seed mask is
Image Exception : #22 :: ERROR: Could not open image /Exps/Data/BIP_ROTMAN/YC/derivatives/sub-5167/dwi/unc_r_bip/seeds*
cp: /Exps/Data/BIP_ROTMAN/YC/derivatives/sub-5167/dwi/unc_r_bip/seeds*: No such file or directory
Cannot open volume /Exps/Data/BIP_ROTMAN/YC/derivatives/sub-5167/dwi/unc_r_bip/roi_B_2 for reading!
Image Exception : #22 :: ERROR: Could not open image /Exps/Data/BIP_ROTMAN/YC/derivatives/sub-5167/dwi/unc_r_bip/roi_B_2
increment i and j
i is 2
j is 3
unc_r
/usr/local/bip/bip.sh: line 197: [: too many arguments