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Hi Laurence, Relion has no control over jobs once you sent them off. Just kill through your queuing system or use 'kill' from the command line or 'top'. You can then delete the failed job from the pipeline through the 'Job actions' button. Whether jobs are running/finished is solely based on the presence of expected output files in the job's directory. HTH, Sjors On 02/26/2018 10:45 PM, Laurence Pearl wrote: > I launched a Class2D job from the RELION GUI, with ‘experimental’ MPI > settings, which then produced an MPI error. The job then hangs and > fails to produce any further output, nor does it finish. Selecting the > job from the ‘Running Jobs’ list and trying to mark it as finished, > produced a message telling me I can’t mark it as finished as it hasn’t > started - do I want to delete it instead. However selecting delete > just hangs the GUI. No actual Class2D job is running on the computer, > and deleting the folder for the zombie job has no effect. I’m guessing > that it lives on in the default_pipeline file and /or some of the > hidden files, but I don’t understand the layout of these well enough > to fiddle with them. > > Any suggestions how to slay this zombie so I can start again with more > conservative MPI settings ? > > Laurence > > ---------------------------------------------------- > Laurence H. Pearl PhD FRS FMedSci > > Professor of Structural Biology > Genome Damage and Stability Centre > University of Sussex, Brighton, BN1 9RQ, UK > > Phone +44-(0)1273 678 349 > ---------------------------------------------------- > "Live Modestly and do Serious Things .. " > - Dorothy Crowfoot Hodgkin > ---------------------------------------------------- > > > > -- Sjors Scheres MRC Laboratory of Molecular Biology Francis Crick Avenue, Cambridge Biomedical Campus Cambridge CB2 0QH, U.K. tel: +44 (0)1223 267061 http://www2.mrc-lmb.cam.ac.uk/groups/scheres