Hi Saad,

Thank you for your help. I tried using fsladd but the terminal shows "command not found".  I'm not sure about what the problem is.

Best,

Noelia

2017-12-19 10:51 GMT+01:00 Saad Jbabdi <[log in to unmask]>:

You can use fsladd   (no need for loops)

Cheers
Saad

> On 19 Dec 2017, at 09:49, Noelia Martinez Molina <[log in to unmask]OM> wrote:
>
> Dear FSL experts,
>
> I need to average images from 38 subjects using fslmaths. The command would be something like this:
>
> fslmaths image1 -add image2 -add image3 ... -add image38 -div 38 average_image
>
> However, I was wondering if you could tell me how to use a loop to create a string with all the -add arguments in order to avoid the tedious of having to write manually all the filenames for each image.
>
> Thank you in advance for your help.
>
> Best,
> Noelia

--

Noelia Martínez-Molina

Cognition and Brain Plasticity Group

Department of Cognition, Development and Educational Psychology

Universitat de Barcelona

Campus Mundet, Edifici de Ponent

Passeig de la Vall d'Hebron 171

08035 Barcelona, Spain

Office: (34) 93 403 47 68

http://brainvitge.org/member/martinez_n/

twitter:@NoeliaMrtnez

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