Hi Leonid,

newstack (from IMOD) can handle these out of the box (provided the header is correct).  It's fast and pretty parallelized, which you'll probably want with 2000 frames.  Since it was written with tomography in mind, it can handle very big files.

Good luck.
mike


On Thu, Dec 14, 2017 at 6:41 PM, Leonid Sazanov <[log in to unmask]> wrote:
Dear all,

While collecting FalconIII data in counting mode accidentally we got some images written out by FEI EPU as raw un-summed frames. I.e. instead of 40 fractions in file we got ~ 2000 frames. We would like to recover those files for further processing but the problem is that these huge files are written in 8 byte signed format and most programs we tried seem to treat it as unsigned (including Relion and Imod). In principle command "relion_image_handler --avg_bin 50 --i file --o file_av " should do what we like but it produces all 40 frames with minimal density = 0 and maximal ~3000, while in properly written by EPU files it ranges from -20 to ~ 600. So it looks like signed numbers are treated as unsigned.
Does anybody knows a way around this?
Many thanks!