On 28 Nov 2017, at 11:37, Zita Eva Patai <[log in to unmask]> wrote:HiSo python fslinstaller.py says it doesn't work for LinuxMint.I am trying now with the https://fsl.fmrib.ox.ac.uk/fsl/fslwiki/FslInstallation/ SourceCode and will let you knowzOn Tue, Nov 28, 2017 at 11:28 AM, Matthew Webster <[log in to unmask]> wrote:Hello,
Can you try reinstalling fsl via the installer script and let me know if you get any error messages?
Kind Regards
Matthew
--------------------------------
Dr Matthew Webster
FMRIB Centre
John Radcliffe Hospital
University of Oxford
> On 27 Nov 2017, at 18:17, Helen Beaumont <[log in to unmask]UK> wrote:
>
> "yum list fsl" reurns
> No matching Packages to list
> Same for FSL.
>
> -----Original Message-----
> From: FSL - FMRIB's Software Library [mailto:[log in to unmask]] On Behalf Of Matthew Webster
> Sent: 27 November 2017 16:51
> To: [log in to unmask]
> Subject: Re: [FSL] Problems with FSL installation
>
> Hello,
> We’ve recently changed fslinstaller.py to install 5.0.10 directly rather than using neurodebian - does yum list fsl as being installed? If so you can remove it, and then try re-installing via the installer script again.
>
> Hope this helps,
> Kind Regards
> Matthew
> --------------------------------
> Dr Matthew Webster
> FMRIB Centre
> John Radcliffe Hospital
> University of Oxford
>
>> On 27 Nov 2017, at 16:28, Helen Beaumont <[log in to unmask]UK> wrote:
>>
>> I've recently installed FSL5.0 onto a new linux system running Ubuntu 16.04. I used the installation script and it seemed to run without error, however I have no /usr/local/fsl folder, and all the fsl utilities are in /usr/bin, with the prefix fsl5.0- in front of all the command names (e.g. to run bet I have to type fsl5.0-bet).
>> At the time I installed FSL there was a problem in the machine configuration, since fixed.
>>
>> Is there any easy way I can uninstall this weird version of FSL and rerun a clean installation with things where they are expected to be? Am I likely to hit any problems further down the road if I continue to use this?
>>
>> Helen Beaumont PhD
>> University of Manchester
>>
--Eva Zita Patai, DPhilPostdoctoral ResearcherInstitute of Behavioural NeuroscienceUCL