Sorry, I had a typo there, you need to specify the version the same way that it's listed in the archive link. So it would be something like: install_version("kernlab", version = "0.9-24", repos = " http://cran.us.r-project.org") which will result in it pulling the following: http://cran.us.r-project.org/src/contrib/Archive/kernlab/kernlab_0.9-24.tar.gz On Tue, Nov 7, 2017 at 4:03 PM, Marta Moreno <[log in to unmask]> wrote: > > Thanks. > > I have installed dev_tools, and then type what was suggested for specific version but I am getting the following error > > > require(devtools) > Loading required package: devtools > > install_version("kernlab", version = "0.9.24", repos = " http://cran.us.r-project.org") > Error in install_version("kernlab", version = "0.9.24", repos = " http://cran.us.r-project.org") : > version '0.9.24' is invalid for package ‘kernlab’ > > > On Nov 7, 2017, at 8:02 AM, Niels Bergsland <[log in to unmask]> wrote: > > You can't install specific versions that way. You can either install the package dev_tools so that you can do something like: > > install_version("kernlab", version = "0.9.24", repos = " http://cran.us.r-project.org") > > Otherwise you can something like: > > packageurl <- " https://cran.r-project.org/src/contrib/Archive/kernlab/kernlab_0.9-24.tar.gz " > install.packages(packageurl, repos=NULL, type="source") > > > > On Tue, Nov 7, 2017 at 1:46 PM, Marta Moreno <[log in to unmask]> wrote: > > > > Thanks. > > > > I am using R version 3.3.2 now but still I am getting same message of package not available, see below: > > "install.packages("kernlab0.9.24", dependencies=TRUE) > > package ‘kernlab_0.9.24’ is not available (for R version 3.3.2)" > > > > On Nov 7, 2017, at 7:37 AM, Niels Bergsland <[log in to unmask]> wrote: > > > > The list of packages is correct but it doesn't specify a specific version(s) of R itself to be used. Might be helpful for others to add when you get a chance. > > > > On Tue, Nov 7, 2017 at 1:28 PM, Stephen Smith <[log in to unmask]> wrote: > >> > >> hi - AFAIK the list at > >> https://fsl.fmrib.ox.ac.uk/fsl/fslwiki/FIX/UserGuide > >> is up to date - but it's really hard to keep the R versions/package version numbering up to date because the R community keeps breaking compatibility with different versions......! > >> > >> Cheers. > >> > >> > >> > >> On 7 Nov 2017, at 12:20, Marta Moreno <[log in to unmask]> wrote: > >> > >> Thanks. > >> What is the R version required to have these packageVersions installed? I am downgrading R and still package ‘kernlab_0.9.24’ is not available for the R version. > >> > >> > >> On Nov 7, 2017, at 12:32 AM, Niels Bergsland <[log in to unmask]> wrote: > >> > >> Hi, > >> If you install these specific versions, it should work as expected: > >> > >> > packageVersion('kernlab') > >> [1] ‘0.9.24’ > >> > packageVersion('ROCR') > >> [1] ‘1.0.7’ > >> > packageVersion('class') > >> [1] ‘7.3.14’ > >> > packageVersion('party') > >> [1] ‘1.0.25’ > >> > packageVersion('e1071') > >> [1] ‘1.6.7’ > >> > packageVersion('randomForest') > >> [1] ‘4.6.12’ > >> > >> > >> On Tue, Nov 7, 2017 at 04:54 Marta Moreno <[log in to unmask]> wrote: > >>> > >>> Dear experts, > >>> > >>> I am running hcp_fix and getting the following error: > >>> "FIX Classifying components in Melodic directory: RS_fMRI_2_hp2000.ica using training file: /usr/local/fix1.065/training_files/HCP_hp2000.RData and threshold 10 > >>> No valid labelling file specified” > >>> > >>> In the log file: .fix_2b_predict.log, I found the following error message: > >>> "Error in ctreefit(object = object, controls = controls, weights = weights, : > >>> no slot of name "remove_weights" for this object of class "TreeGrowControl" > >>> Calls: eval -> eval -> <Anonymous> -> ctreefit -> .Call > >>> Execution halted” > >>> > >>> I am running R 4.3.2 and packageVersion("party”) is 1.2.3. Fix version is 1.065. Please advice. > >>> > >>> Thank you, > >>> > >>> -L > >>> > >> -- > >> Niels Bergsland > >> Integration Director / Research Assistant Professor of Neurology > >> Buffalo Neuroimaging Analysis Center / University at Buffalo > >> 100 High St. Buffalo NY 14203 > >> [log in to unmask] > >> > >> > >> > >> > >> --------------------------------------------------------------------------- > >> Stephen M. Smith, Professor of Biomedical Engineering > >> Head of Analysis, Oxford University FMRIB Centre > >> > >> FMRIB, JR Hospital, Headington, Oxford OX3 9DU, UK > >> +44 (0) 1865 222726 (fax 222717) > >> [log in to unmask] http://www.fmrib.ox.ac.uk/~steve > >> --------------------------------------------------------------------------- > >> > >> Stop the cultural destruction of Tibet > >> > >> > >> > >> > >> > > > > > > > > -- > > Niels Bergsland > > Integration Director / Research Assistant Professor of Neurology > > Buffalo Neuroimaging Analysis Center / University at Buffalo > > 100 High St. Buffalo NY 14203 > > [log in to unmask] > > > > > > > > -- > Niels Bergsland > Integration Director / Research Assistant Professor of Neurology > Buffalo Neuroimaging Analysis Center / University at Buffalo > 100 High St. Buffalo NY 14203 > [log in to unmask] > > -- Niels Bergsland Integration Director / Research Assistant Professor of Neurology Buffalo Neuroimaging Analysis Center / University at Buffalo 100 High St. Buffalo NY 14203 [log in to unmask]