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Youšll ideally want to view CIFTI files either on a surface atlas spec file or an average of your subjects surfaces. You can find some atlases in the HCP download. For specific questions about wb_view and CIFTI, the HCP Users list is the best place to ask, as that is where these things are officially supported. Peace, Matt. On 10/16/17, 11:40 AM, "FSL - FMRIB's Software Library on behalf of Colin Hawco" <[log in to unmask] on behalf of [log in to unmask]> wrote: >Not such a stupid question if you are new to wb_view. You need to load a >spec file with an anatomical scan as the 'underlay'. It must be in the >same size-space as your palm results (e.g. 32K or 64K verticies). > >You can use the one I am using if you wish, which is an MNI template >brain. Sorry I cannot recall the original source, a colleague shared it >with me. Though I think it is from HCP data. > >https://www.dropbox.com/s/9unrwc5w4dldqs7/cvs_avg35_inMNI152.zip?dl=0 > >Good luck. > >Colin Hawco, PhD >Neuranalysis Consulting >Neuroimaging analysis and consultation >www.neuranalysis.com >[log in to unmask] > > >-----Original Message----- >From: FSL - FMRIB's Software Library [mailto:[log in to unmask]] On >Behalf Of Darko Komnenic >Sent: October-16-17 12:19 PM >To: [log in to unmask] >Subject: [FSL] Viewing the results of PALM in wb_view > >Hello everyone, >I have a most likely really basic and stupid question, but I can't seem >to find the answer by myself: On the following link: >https://fsl.fmrib.ox.ac.uk/fsl/fslwiki/PALM/Examples#Example_10:_Using_CIF >TI_files >it says that we can use wb_view to open the cifti files that we get after >merging the .dscalar.nii files, which we get as results of PALM analysis. >In other words, I got the FWE-corrected T-statistic values showing >differences in values of a certain variable between two groups, and I >would like to view those values. >However, I haven't been able to view these files. Their type is >dscalar.nii, and wb_view seems to demand a file that has a type of >either: spec, wb.spec, scene, or wb.scene. >Could you please walk me through the process of opening these merged >Tstat values? >Thanks! >Darko