Print

Print


Dear Nishant,

Did you ever get an answer to your question? I came across it while looking through old e-mails. This has happened to me on every Mac I have run MrBUMP on in recent years (always in Sweden). You need to go to 

/Applications/ccp4-7.0/Frameworks/Python.framework/Versions/2.7/lib/python2.7/locale.py

and comment out lines 576-579, i.e.

#    if locale and type(locale) is not type(""):
#        # convert to string
#        locale = normalize(_build_localename(locale))
#    return _setlocale(category, locale)

 I don't know if this is the most elegant solution, but it works and it doesn't seem to break anything else.

/Derek

On 5 Sep 2017, at 13:17, Nishant Varshney <[log in to unmask]> wrote:

Dear Crystallographer,

I will be grateful if you help me with what may be a simple problem. While trying MrBUMP with my mtz file , I am currently getting the following error. Similar error I am getting while trying AMPLE as well.

"CCP4I VERSION CCP4Interface 7.0.044
#CCP4I SCRIPT LOG mrbump
#CCP4I DATE 01 Sep 2017  15:58:19
#CCP4I USER apple
#CCP4I PROJECT Josephin
#CCP4I JOB_ID 45
#CCP4I SCRATCH /tmp/apple
#CCP4I HOSTNAME Apples-iMac.local
#CCP4I PID 933

http_proxy not specified in environemnt
***************************************************************************
* Information from CCP4Interface script
***************************************************************************
The program run with command: /Applications/ccp4-7.0/bin/mrbump HKLIN /Users/apple/Documents/Nishant/Josephin_data/ccp4/XDS_ASCII_scaled1.mtz SEQIN /Users/apple/Documents/Nishant/Josephin_data/Phenix/Q15040.fasta HKLOUT /Users/apple/Documents/Nishant/Josephin_data/ccp4/XDS_ASCII_scaled1_mrbump_soln1.mtz XYZOUT /Users/apple/Documents/Nishant/Josephin_data/ccp4/XDS_ASCII_scaled1_mrbump_soln1.pdb KEYIN /tmp/apple/Josephin_45_1_com.tmp 
has failed with error message
Traceback (most recent call last):
  File "/Applications/ccp4-7.0/Frameworks/Python.framework/Versions/2.7/lib/python2.7/runpy.py", line 162, in _run_module_as_main
    "__main__", fname, loader, pkg_name)
  File "/Applications/ccp4-7.0/Frameworks/Python.framework/Versions/2.7/lib/python2.7/runpy.py", line 72, in _run_code
    exec code in run_globals
  File "/Applications/ccp4-7.0/lib/py2/mrbump/__main__.py", line 85, in <module>
    import MRBUMP_master
  File "/Applications/ccp4-7.0/share/mrbump/include/initialisation/MRBUMP_master.py", line 17, in <module>
    import Matches 
  File "/Applications/ccp4-7.0/share/mrbump/include/structures/Matches.py", line 29, in <module>
    import Write_MR_results
  File "/Applications/ccp4-7.0/share/mrbump/include/output/Write_MR_results.py", line 20, in <module>
    import printTable
  File "/Applications/ccp4-7.0/share/mrbump/include/output/printTable.py", line 5, in <module>
    locale.setlocale(locale.LC_NUMERIC, "")
  File "/Applications/ccp4-7.0/Frameworks/Python.framework/Versions/2.7/lib/python2.7/locale.py", line 579, in setlocale
    return _setlocale(category, locale)
locale.Error: unsupported locale setting
***************************************************************************


#CCP4I TERMINATION STATUS 0 "Traceback (most recent call last):   File "/Applications/ccp4-7.0/Frameworks/Python.framework/Versions/2.7/lib/python2.7/runpy.py", line 162, in _run_module_as_main     "__main__", fname, loader, pkg_name)   File "/Applications/ccp4-7.0/Frameworks/Python.framework/Versions/2.7/lib/python2.7/runpy.py", line 72, in _run_code     exec code in run_globals   File "/Applications/ccp4-7.0/lib/py2/mrbump/__main__.py", line 85, in <module>     import MRBUMP_master   File "/Applications/ccp4-7.0/share/mrbump/include/initialisation/MRBUMP_master.py", line 17, in <module>     import Matches    File "/Applications/ccp4-7.0/share/mrbump/include/structures/Matches.py", line 29, in <module>     import Write_MR_results   File "/Applications/ccp4-7.0/share/mrbump/include/output/Write_MR_results.py", line 20, in <module>     import printTable   File "/Applications/ccp4-7.0/share/mrbump/include/output/printTable.py", line 5, in <module>     locale.setlocale(locale.LC_NUMERIC, "")   File "/Applications/ccp4-7.0/Frameworks/Python.framework/Versions/2.7/lib/python2.7/locale.py", line 579, in setlocale     return _setlocale(category, locale) locale.Error: unsupported locale setting"
#CCP4I TERMINATION TIME 01 Sep 2017  15:58:20
#CCP4I TERMINATION OUTPUT_FILES   /Users/apple/Documents/Nishant/Josephin_data/ccp4/search_45
#CCP4I MESSAGE Task failed


Looking forward for your help

Regards
Nishant

--
Dr. Nishant Kumar Varshney,
Research Associate,
C/O Dr. Sameena Khan,
Drug Discovery Research Center,
Translational Health Science and Technology Institute (THSTI)
NCR Biotech Science Cluster,
3rd Milestone, Faridabad – Gurgaon Expressway,
Faridabad – 121001 (HARYANA), India
Ph: +91- 0129-2876477
Mob: 8390564690
<45_mrbump.log>