Dear Anderson


Many thanks! You are always quite helpful.


I have been able to get the atlas output and I have one more questions: how to interpret the meaning of the numbers in yellow and in green in the following output.


------------------------------------------

Structures to which each center of mass belongs to:
1,-7.97,-12.6,28.3,JHU ICBM-DTI-81 White-Matter Labels,Body of corpus callosum
------------------------------------------
Structures to which each cluster belongs to:

Cluster #1
Unclassified:57.6045
Genu of corpus callosum:2.77612
Body of corpus callosum:9.45522

Many thanks in advance!!


Best wishes


Xixi

From: FSL - FMRIB's Software Library <[log in to unmask]> on behalf of Anderson M. Winkler <[log in to unmask]>
Sent: 25 August 2017 10:13:41
To: [log in to unmask]
Subject: Re: [FSL] cluster output
 
Hi Xixi,

The command "autoaq" (automatic atlas queries) can be used for this. Use 0.95.

All the best,

Anderson


On Wednesday, 23 August 2017, SUBSCRIBE FSL Xixi. Y <[log in to unmask]> wrote:
Dear experts

I have got some results after TBSS randomise and would like to see which are the clusters showing significance (p < 0.05)

Based on 'Cluster' webpage, I got the values of clusters in size order, but how could I get the names (atlas) of the clusters? Is there anyway to output the names (atlas) of the clusters and the values, etc.

Besides, when I run the command:
cluster --in=<filename> --thresh=<value>
is it correct if I put 0.05 as the thresh value? Or should I put 0.95 based on TBSS commands?

Many thanks in advance!

Best wishes

Xixi