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Hi Sara,


The problem is with the first error:

/usr/local/fsl/bin/tbss_non_FA: line 96: /usr/local/fsl/bin/imglob: Argument list too long​

I suspect that you need to tweak the script in line 91 of tbss_non_FA IIRC such that intermediary files in FA folders do not get called up.


What files are in your FA folder?



Danny


From: FSL - FMRIB's Software Library <[log in to unmask]> on behalf of [log in to unmask] <[log in to unmask]>
Sent: Wednesday, August 23, 2017 12:11 PM
To: [log in to unmask]
Subject: Re: [FSL] tbss_non_FA
 
Hi Matthew,

Could this problem be related to the FA registration target and the fact that it may not be a good target for AD maps. If so, how can I change the target map for my AD files. Plus, when unsampled AS images are created, where do they get saved? How can I check them.

Thanks,
Sara
From: FSL - FMRIB's Software Library [[log in to unmask]] on behalf of [log in to unmask] [[log in to unmask]]
Sent: Wednesday, August 23, 2017 9:23 AM
To: [log in to unmask]
Subject: Re: [FSL] tbss_non_FA

Hi,

I am using FSL 5.0.9

Thanks,
Sara
From: FSL - FMRIB's Software Library [[log in to unmask]] on behalf of Matthew Webster [[log in to unmask]]
Sent: Wednesday, August 23, 2017 5:07 AM
To: [log in to unmask]
Subject: Re: [FSL] tbss_non_FA

Hello, 
         Can you confirm which version of FSL you are using?

Kind Regards
Matthew
--------------------------------
Dr Matthew Webster
FMRIB Centre 
John Radcliffe Hospital
University of Oxford

On 20 Aug 2017, at 04:19, [log in to unmask] <[log in to unmask]> wrote:

Hi FSL team,

I want to run TBSS on my AD data. I followed the instruction on the website and I still get the following error:

/usr/local/fsl/bin/tbss_non_FA: line 96: /usr/local/fsl/bin/imglob: Argument list too long

merging all upsampled AD images into single 4D image


Usage: fslmerge <-x/y/z/t/a/tr> <output> <file1 file2 .......> [tr value in seconds]

     -t : concatenate images in time

     -x : concatenate images in the x direction

     -y : concatenate images in the y direction

     -z : concatenate images in the z direction

     -a : auto-choose: single slices -> volume, volumes -> 4D (time series)

     -tr : concatenate images in time and set the output image tr to the final option value

Cannot open volume all_AD for reading!

projecting all_AD onto mean FA skeleton

Image Exception : #22 :: ERROR: Could not open image all_AD

libc++abi.dylib: terminating with uncaught exception of type RBD_COMMON::BaseException

/usr/local/fsl/bin/tbss_non_FA: line 105: 82036 Abort trap: 6



Would you please guide me on how to resolve this issue.


Thanks,

Sara