Hi,

No, there is no equivalent option in MCFLIRT.

If you want to use this then you can script up FLIRT to register each 3D volume to a chosen reference volume. You just need to split up the 4D file first (e.g. using fslsplit) and then merge together the 3D outputs (e.g. using fslmerge).

All the best,

Mark

On 14 Aug 2017, at 08:34, Jonathan Williford <[log in to unmask]> wrote:

Dear all,

FLIRT has a "-refweight" and "-inweight" option, but MCFLIRT doesn't seem to have any such option. Is there a way to provide weights to the motion correction?

Thanks!

Jonathan