Hi,

Are you using the old style of vertex analysis?

We recommend using the one that is based on volumetric images and uses randomise: see https://fsl.fmrib.ox.ac.uk/fsl/fslwiki/FIRST/UserGuide#Vertex_Analysis_.28with_NEW_features_in_v5.0.0.29

From the output of randomise it is easy to get the coordinates either through a viewing tool (e.g. FSLeyes or FSLView) or using the script "cluster".

All the best,

Mark

On 5 Jul 2017, at 14:10, Angela Bernabeu Sanz <[log in to unmask]> wrote:

Dear comunity,

I have performed the vertex analysis of both thalami in a group of patients and controls.

The results are great, I am able to see the affected areas however I would like to get the MNI coordinates ir order to know more specifically the thalamic areas affected.

I have tried to load the thalamic atlases but it does not work. The cursor also is not able to locate the mni coordinates on the vtk image.

Has anyone know if there is any option that allows to obtain the specifical anatomical areas or the ccordinates?

Thanks!