Hi Kim,

try the -o option, it will output the image of cluster index. you could then threshold this image with fslmaths

good luck,

guangyu

On Thu, Jun 1, 2017 at 9:21 AM, Kim Li <[log in to unmask]> wrote:

Hi All,

I am wondering if there's a way to set up a threshold for the minimal cluster size in an image. Like specifying that only clusters bigger than 10 voxels will be shown etc. I read some previous posts and it seems like it is not available.
I tried using the cluster command with --minclustersize but it does not provide me the output image I want.

Thank you

Kim