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Hi Navot, Please, see below: On 9 May 2017 at 18:28, Navot Naor <[log in to unmask]> wrote: > Dear Anderson, > > Thank you very much for the suggestion, i run the code and i have > (unsurprisingly) a few followup questions. > > 1.Which Min-Max values would you use on the corrected data? Or would you > leave it as is? > Do you mean for visualisation? The min is 1.3, the max could vary. > > 2.How do i extract the clusters from the maps i have received? (the > cluster browser option in fslview is unavailable) > Have a look into the command "cluster". > > 3. I have many scattered small dots of activation across the brain, how > would you make sense of that in to something coherent? > Maybe there is nothing to be made sense of... > > 4. I have a lot of activation outside of the standard background i used, > aside from doing better job in cleaning movement (throwing out a few more > participants) how can i deal with that? > Check if the registration of the subjects to the standard space went well. Also, consider using a mask. > > 5. s there any good manual i could read so not to burden this forum with > basic questions? > The FSL Course materials are very handy: https://fsl.fmrib.ox. ac.uk/fslcourse/ All the best, Anderson > > Thank you! > > Navot >