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Thank you, 

But i think i am missing something fundamental here.
Can anyone please confirm that the follow i'm trying out makes sense. 

i wish to run a Randomise analysis for a group of 32 participants with 2 runs each.

First level i run FEAT for each individual run with the basic conditions i wish to contrast in the group level.
Next i run a higher level analysis averaging the runs per participants, yielding 7 cope directories per participants. 
In order to run Randomise i need to convert the 3d cope images to one 4d file, for that i need to use fslmerge, only that this part doesn't work :)

what am i doing wrong?

Thank you, 

Navot