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Due to the way that's implemented that's quite a major change - it's been that way for years... I'll see what I can do.

Sent from my iPhone

On 26 Apr 2017, at 06:23, Juergen Haenggi <[log in to unmask]> wrote:

Dear Matthew

thanks a lot for the new FSL release.
the python script does not work on my Mac.
Is it possible to download the whole FSL package to install FSL without the python script?

Thanks in advance
Regards
Jürgen Hänggi




Am 25.04.2017 um 17:04 schrieb Matthew Webster:

FSL 5.0.10 has been released.

This release is intended to be the final release in the 5.0.x branch of FSL, and contains a number of beta versions of future tools as well as bug-fixes to existing projects.

Due to the increasing use of python modules, FSL now requires a miniconda-based python distribution ( named fslpython ) to be installed. If you are installing FSL via the installer script this will be done automatically. Manual installation of FSL will require a script to be run once the FSL environment has been setup, please see the wiki for more details.

* FSLeyes - an advanced image viewer with many new features. FSLview has been deprecated, but is still included in this release for legacy purposes.
( Beta ) Higher level analyses in FEAT can use randomise instead of FLAME to generate statistics.
( Beta ) MIST - A new and more flexible tool for multimodal subcortical segmentation. The beta release supports segmentation of the putamen, globus pallidus, caudate nucleus and thalamus using T1-, T2- and diffusion-weighted data. For more information, see http://dx.doi.org/10.1016/j.neuroimage.2015.10.013.
( Beta ) MSM - A new tool for cortical surface registration. Registration can use a wide variety of univariate, multivariate and multimodal feature sets. For more information, see http://dx.doi.org/10.1016/j.neuroimage.2014.05.069.
( Beta ) BIANCA - A new tool for automatic segmentation of white matter hyperintensities based on manual training data. The tool is very flexible with respect to input MRI modalities. For more information, see http://dx.doi.org/10.1016/j.neuroimage.2016.07.018. 
( Beta ) FILM, FLAMEO and MELODIC can run on CIFTI files.
* Minor changes have been made to FEAT reporting to make results complaint with NIDM-Results ( http://dx.doi.org/10.1038/sdata.2016.102 )
* The default cluster-forming threshold in FEAT has been changed to 3.1.
* A Fornix template image, kindly provided by Brian Gold, has been added to the atlases.
* A 18-connectivity bug in cluster has been fixed.
* Temporal concatenation in MELODIC now defaults to using MIGP.
* POSSUM has a number of improvements and fixes.

The full distribution can be downloaded from


either by the installer script or direct download. If you already have FSL installed, the installer script will backup an existing version as part of the install process.

A patch for Debian/Ubuntu should be available sometime soon, courtesy of Michael Hanke.

Kind Regards

Matthew
--------------------------------
Dr Matthew Webster
FMRIB Centre 
John Radcliffe Hospital
University of Oxford