 |
 |
No, I didn't realize there is a patch. I am going to communicate with cluster people with replacing these files. I will update with you soon. Thanks, Yurui On Tue, Apr 4, 2017 at 3:38 PM, Moises Hernandez <[log in to unmask]> wrote: > Did you try with this patch? > https://fsl.fmrib.ox.ac.uk/fsldownloads/patches/bedpostx-patch-fsl-5.0.9/ > > You just need to replace these files in your $FSLDIR/bin directory. > > Moises. > > On 4 April 2017 at 21:15, Yurui Gao <[log in to unmask]> wrote: > >> Hi Moises, >> >> Thanks for you reply. logs.e20702 file says >> /bin/sh: line 1: /scratch/gaoy3/Diesel/b3000_GPU.bedpostX/logs: is a >> directory >> >> The other log files are empty. >> >> >> Yurui >> >> On Tue, Apr 4, 2017 at 12:57 PM, Moises Hernandez <[log in to unmask]> >> wrote: >> >>> Hi Yurui, >>> >>> Is there anything inside the log files? >>> >>> Moises. >>> >>> On 4 April 2017 at 18:38, Yurui Gao <[log in to unmask]> wrote: >>> >>>> Dear FSL designers, >>>> >>>> I am trying to run bedpostx_gpu on our university cluster with Nvidia >>>> nodes. The fsl version is 5.0.9 and the cuda version is 6.5. The system of >>>> cluster is Centos6. When I run bedpostx_gpu, it basically creating folders >>>> and log files without doing any real calculation. The following is what >>>> terminal shows: >>>> --------------------------------------------- >>>> ------------ BedpostX GPU Version ----------- >>>> --------------------------------------------- >>>> subjectdir is /scratch/gaoy3/Diesel/b3000_GPU >>>> Making bedpostx directory structure >>>> Copying files to bedpost directory >>>> Pre-processing stage >>>> Queuing parallel processing stage >>>> >>>> ----- Bedpostx Monitor ----- >>>> /bin/sh: line 1: /scratch/gaoy3/Diesel/b3000_GPU.bedpostX/logs: is a >>>> directory >>>> Queuing post processing stage >>>> >>>> Would you please give me some suggestions on this? >>>> >>>> >>>> Yurui Gao >>>> >>>> >>> >>> >> >