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Did you try with this patch? https://fsl.fmrib.ox.ac.uk/fsldownloads/patches/bedpostx-patch-fsl-5.0.9/ You just need to replace these files in your $FSLDIR/bin directory. Moises. On 4 April 2017 at 21:15, Yurui Gao <[log in to unmask]> wrote: > Hi Moises, > > Thanks for you reply. logs.e20702 file says > /bin/sh: line 1: /scratch/gaoy3/Diesel/b3000_GPU.bedpostX/logs: is a > directory > > The other log files are empty. > > > Yurui > > On Tue, Apr 4, 2017 at 12:57 PM, Moises Hernandez <[log in to unmask]> > wrote: > >> Hi Yurui, >> >> Is there anything inside the log files? >> >> Moises. >> >> On 4 April 2017 at 18:38, Yurui Gao <[log in to unmask]> wrote: >> >>> Dear FSL designers, >>> >>> I am trying to run bedpostx_gpu on our university cluster with Nvidia >>> nodes. The fsl version is 5.0.9 and the cuda version is 6.5. The system of >>> cluster is Centos6. When I run bedpostx_gpu, it basically creating folders >>> and log files without doing any real calculation. The following is what >>> terminal shows: >>> --------------------------------------------- >>> ------------ BedpostX GPU Version ----------- >>> --------------------------------------------- >>> subjectdir is /scratch/gaoy3/Diesel/b3000_GPU >>> Making bedpostx directory structure >>> Copying files to bedpost directory >>> Pre-processing stage >>> Queuing parallel processing stage >>> >>> ----- Bedpostx Monitor ----- >>> /bin/sh: line 1: /scratch/gaoy3/Diesel/b3000_GPU.bedpostX/logs: is a >>> directory >>> Queuing post processing stage >>> >>> Would you please give me some suggestions on this? >>> >>> >>> Yurui Gao >>> >>> >> >> >