Hi Mark,
Thank so much for your response.
I tried the following:
On 27 Feb 2017, at 19:53, Emily Louise Belleau <[log in to unmask]> wrote:
Hello FSL Experts,
I am working on combining MRS with resting state connectivity. I am trying to use the MRS voxel as the seed for the resting state connectivity.
For each subject, our physicist gave me the MRS voxel (rostral anterior cingulate cortex) overlayed onto each subject's gray matter mask.
However, the physicist did a lot reorienting/resizing of the gray matter mask to fit the MRS voxel in FSL, so that the gray matter mask is no longer in native T1 space.
I would like to get the gray matter mask with the overlayed MRS voxel back into T1 space.
Since I ultimately preprocessed the resting state data in SPM, I planned to warp the rACC mask using SPM normalization since I know that SPM MNI space is a bit different from FSL MNI space.
Any thoughts on how best to go about doing this?
The racc_mask overlay is labeled a "2", all the gray matter is labeled a "1", and everything else is labeled "0".
Thanks you! I sure would appreciate any guidance!
Emily