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Is there a dictionary entry for your sulfinic cisteine? And is it part of the aa chain with a sequential numbering? I f so check it is labelled peptide in the dictionary (look at the dictionary for any amino acid tto check the format..] If so it should be linked properly. Or attach the dictionary and the cooydinates of the cysteine to an email and I will check it for you. Eleanor On 11 March 2017 at 17:37, Renato Mateus Domingos <[log in to unmask]> wrote: > Hi > > I add the sulfinic cisteine in my coordenate map, however I am strugling > to make proper bonds between the aa chain of the protein and the sulfinic > cysteine I added. the PDB does not recognize the modified cysteine I added > as an amino acid. Any help please? > > thanks > *Renato Mateus Domingos* > *PhD student at Departamento de Genética e Biologia Evolutiva* > *Universidade de São Paulo, Brazil* > *Phone: (+55)(11)30917590* >