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Hello,

Thank you very much for your help. I will change it (I somehow missed that informantion)

I typed the commands:
brain@neurodebian:~$ apt-cache policy fsl-5.0-complete
fsl-5.0-complete:
  Installed: 5.0.7-1~nd80+1
  Candidate: 5.0.7-1~nd80+1
  Version table:
 *** 5.0.7-1~nd80+1 0
        500 http://neuro.debian.net/debian/ jessie/contrib amd64 Packages
        100 /var/lib/dpkg/status
brain@neurodebian:~$ ls -l /usr/share/fsl/5.0/bin/ | grep distancemap
-rwxr-xr-x 1 root root   80888 May 27  2016 distancemap
brain@neurodebian:~$

Best,
Alina


On Tue, Feb 7, 2017 at 2:26 PM, Niels Bergsland <[log in to unmask]> wrote:
Hi,
It's a bit odd as this is a tool that has been around for a long time, but what is the output of:

> apt-cache policy fsl-5.0-complete

Also, what is the output of:

> ls -l /usr/share/fsl/5.0/bin/ | grep distancemap

By the way, if you add " . /etc/fsl/5.0/fsl.sh" to your ~/.bashrc (as specified in the man page for the Neurodebian fsl installation), you won't need to preface your commands with fsl5.0-





On Tue, Feb 7, 2017 at 12:46 PM, Alina Dinu <[log in to unmask]> wrote:
>
> Hello,
>
> Could you please help me? I am using neurodebian with fsl 5.0 and I have the following error:
>
> distancemap: command not found
>
> I know that for this fsl version I have to add fsl5.0- in front of every command. I did, it works for fslmath and other commands but not for distancemap. (fsl5.0-distance map also doesn't work).
>
> All the best,
> Alina




--
Niels Bergsland
Integration Director
Buffalo Neuroimaging Analysis Center
100 High St. Buffalo NY 14203
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