Hello FSL Experts,
I am trying to run eddy on my DWI data using the following input command:
eddy --imain=dwidata --mask=hifi_nodiff_brain_mask \--index=index.txt --acqp=acqparams.txt --bvecs=bvecs --bvals=bvals \--fwhm=0 --topup=topup_AP_PA_b0 --flm=quadratic --out=eddy_unwarped_images ;
When I do this, I receive the following error message:
terminate called after throwing an instance of 'EDDY::EddyException'
what():
Aborted (core dumped)
I have never seen anything like this before. How do I fix this?
I am not sure what might cause this. Often when eddy throws and exception it gives a sensible error message, but that doesn’t seem to have happened here.
The only way in which I can find out what went wrong would be by taking a look at your data. If you want me to do that, please tar all the files referred to on the command line above into a tarball and upload that to
I will try to take a look at it in the next few days.
Best regards Jesper