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Hi, me-ica (part of AFNI) can be used for preprocessing multi-echo fMRI. See: https://bitbucket.org/prantikk/me-ica https://afni.nimh.nih.gov/pub/dist/src/pkundu/README.meica On Fri, Jan 6, 2017 at 3:05 PM, Peyman Najafi <[log in to unmask]> wrote: > Dear colleagues, > I want to do connectivity analysis on multi-echo fMRI images. Is there any > pipelines that have been developed for this propose? > If there is none, should I preprocessing all the images with the same TE > (as separate set of images) and after that combine them or I should combine > them at first and then start preprocessing? > all the best > Peyman > -- Niels Bergsland Integration Director Buffalo Neuroimaging Analysis Center 100 High St. Buffalo NY 14203 [log in to unmask]