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Dear Heidi, I don't anticipate any particular problem from using FSL preprocessed data in SPM but it will make your life much easier if you redo the first level modelling in SPM as you will need to provide DCM with ROI-extracted time series and details about your experimental design in a specific format. Best regards, Guillaume. On 13/12/16 10:01, Jacobs H (NP) wrote: > Dear SPM-ers, > > I have data that is completely processed in FSL (preprocessing and first > level analyses). > Now, I would like to run a DCM analyses on this data. What would be the > best way to proceed without redoing everything in SPM. > So how can I create a .mat file containing the task information > (contrasts) and the nifti files? > > Many thanks! > All the best > Heidi -- Guillaume Flandin, PhD Wellcome Trust Centre for Neuroimaging University College London 12 Queen Square London WC1N 3BG